View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19425_low_6 (Length: 667)
Name: NF19425_low_6
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 401
Target Start/End: Complemental strand, 40828305 - 40827917
Alignment:
| Q |
16 |
catattgccttaacgtggaaaaaattaaatgttacgcgtatagaaatatttagtcatacattattctcaaagagtcatgaactagtttatgatttgaaaa |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40828305 |
catattgccttaacgtggaaataattaaatgttacgcgtatagaaatatttagtcatacattattctcaaagagtcatgaactagtttatgatttgaaaa |
40828206 |
T |
|
| Q |
116 |
ag---tgtgaatggaacttttgatcacacacttgaatagtttctatcttgccttttttgtttagaatacattttttcagttcaaggaaaccaaacctcaa |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40828205 |
agaagtgtgaatggaacttttgatcacacacttgaatagtttctatcttgccttttttgttgagaatacattttttcagttcaaggaaaccaaacctcaa |
40828106 |
T |
|
| Q |
213 |
ctttacactatttttgagtaatatgtgatgtgaaagacattaatacgtagaatgtaacttattatctataaagaaaataggtgagtttccagaattagat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40828105 |
ctttacactatttttgagtaatatgtgatgtgaaagacattaatacgtagaatgtaacttattatctataaagaaaataggtgagtttccagaattagat |
40828006 |
T |
|
| Q |
313 |
cgttagagggtagagctagctgctacataattagaagtatatcattaacaaccatcatcatcacgtgtaaggcattaatatgtgatgtc |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40828005 |
cgttagagggtagagctagctgctacataattagaagtatatcattaacaaccatcatcatcacgtgtaaggcattaatatgtgatgtc |
40827917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 472 - 655
Target Start/End: Complemental strand, 40827846 - 40827663
Alignment:
| Q |
472 |
ttgtaggtagcatttttcattttaacttggaactctagtataggcagcattttgagtaaatatatattcttttcaagatttttattttaagaaactaggg |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40827846 |
ttgtaggtagcatttttcattttaacttggatctctagtataggcagcattttgagtaaatatatattcttttcatgatttttattttaagaaactaggg |
40827747 |
T |
|
| Q |
572 |
tttgagtttccagaagtagataattggacactagagctagcaatggacattcatcatcatgtgcattgttccacccctttgctt |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40827746 |
tttgagtttccagaagtagataattggacactagagctagcaatggacattcatcatcatgtgcattgttccacccctttgctt |
40827663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University