View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_62 (Length: 265)
Name: NF19425_low_62
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_62 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29274105 - 29274326
Alignment:
| Q |
1 |
tgattgcatagccatgagaattgagaagaaattaatggaagataggaggattgtttgagaataaagaatatggatgagtaggtgtatgttattgttggcc |
100 |
Q |
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| T |
29274105 |
tgattgcatagccatgaga-ttgagaagaaattaatggaagatag-aggattgtttgagaatatagaatatggatgagtaggtgtatgttattgttggcc |
29274202 |
T |
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| Q |
101 |
tcagtatatataaaaattgcaagtgtgaacttcgttaccttttctcctaagtgtgacttgtgtcgagtctattaaaatataataaaaaagaagccaattt |
200 |
Q |
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| T |
29274203 |
tcagtatatatataaattgcaagtgtgaacttcgttaccttttctcctccgtgtgacttgtgtgaagtctgttaaaatataataaaaaagaagccaattt |
29274302 |
T |
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| Q |
201 |
taacaactctctatcacacattaa |
224 |
Q |
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| T |
29274303 |
taacaactctctatcacacattaa |
29274326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 268679 - 268968
Alignment:
| Q |
1 |
tgattgcatagccatgagaattgagaagaaattaatggaagataggaggattgtttgagaataaagaatatggatgagtaggtgtatgttattgttggcc |
100 |
Q |
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| T |
268679 |
tgattgcatagccatgagaactgagaagaaattaatggaagataggaggattgtttgagaatatagaatatggatgagtaggtgtatactattgttggcc |
268778 |
T |
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| Q |
101 |
tc---------------------agtatatataaaaattgcaag-tgtgaacttcgttaccttttctcctaagtgtgacttgtgtcgagtctattaaaat |
178 |
Q |
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| T |
268779 |
tctgtaatataaaactatgtaacagtatatataaaaattgcaatctatgaacttcgttaccttttcgcctccgtgtgacttgtgtcgagtctgttaaaat |
268878 |
T |
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| Q |
179 |
ataataaaaaagaagccaattttaacaactctctatcacacattaatataataattgtctcacactctaagc----ggacaggaagtagat |
265 |
Q |
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| T |
268879 |
ataataaaaaaaaa-ccaattttaacaactctctgtcacacattaatataataattgtctcactctctaagcgtagggacaggaagtagat |
268968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 26646324 - 26646116
Alignment:
| Q |
2 |
gattgcatagccatgagaattgagaagaaattaatggaagataggagg--attgtttgagaataaagaatatggatgagtaggtgtatgttattgttggc |
99 |
Q |
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| T |
26646324 |
gattgcatagccatgagaattgaaaggaaattaatggaagataggaggatattgtttaagaatacagaatatggatgagttggtgtatgttattgttggc |
26646225 |
T |
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| Q |
100 |
ctcagtatatataaaaattgcaagtgtgaacttcgttacc-ttttctcctaagtgtgacttgtgtcgagtctattaaaatataa-taaaaaagaagccaa |
197 |
Q |
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| T |
26646224 |
ctctgta-atataacact---aaat-agaactttcttaccattttctcctccgcgtggcttgtgtccagtctgttaaaatataactaaataacaagccaa |
26646130 |
T |
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| Q |
198 |
ttttaacaactctc |
211 |
Q |
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| T |
26646129 |
ttttaacaactctc |
26646116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 211
Target Start/End: Complemental strand, 26752292 - 26752084
Alignment:
| Q |
2 |
gattgcatagccatgagaattgagaagaaattaatggaagataggagg--attgtttgagaataaagaatatggatgagtaggtgtatgttattgttggc |
99 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
26752292 |
gattgcatagccatgagaattgaaaggaaattaatggaagataggaggatattgtttaagaatacagaatatggatgagttggtgtatgttattgttggc |
26752193 |
T |
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| Q |
100 |
ctcagtatatataaaaattgcaagtgtgaacttcgttacc-ttttctcctaagtgtgacttgtgtcgagtctattaaaatataa-taaaaaagaagccaa |
197 |
Q |
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| T |
26752192 |
ctctgta-atataacact---aaat-agaactttcttaccattttctcctccgcgtggcttgtgtccagtctgttaaaatataactaaataacaagccaa |
26752098 |
T |
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| Q |
198 |
ttttaacaactctc |
211 |
Q |
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| T |
26752097 |
ttttaacaactctc |
26752084 |
T |
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