View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_68 (Length: 252)
Name: NF19425_low_68
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 17992933 - 17993167
Alignment:
| Q |
15 |
agccaacagaagcttccatttgttcattccatagttgtttatcttcaaaagttagaaaattaatcaaccataaaagtataaatagaaagaaaaacatcat |
114 |
Q |
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| T |
17992933 |
agccaacagaagcttccatttgttcattccatagttgtttatcttcaaaagttagaaaattaatcaaccataaaagtataaatagaaagaaaaacatcat |
17993032 |
T |
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| Q |
115 |
tttcttatattttcttctcttcactctcatcccccgtcatttcattctccttaaagaatttcaattgacgacctcatgtatcttcactttctttcccgcc |
214 |
Q |
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| T |
17993033 |
tttcttatattttcttctcttcactctcat-ccccgtcatttcattctccttaaagaatttcaattgacgacctcgtgtatcttcactttctttctcgcc |
17993131 |
T |
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| Q |
215 |
ataaaggagcaactttgttcaaacatgttcactgcg |
250 |
Q |
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| T |
17993132 |
ataaaggagcaactttgttcaaacatgttcactgcg |
17993167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 19318916 - 19318765
Alignment:
| Q |
17 |
ccaacagaagcttccatttgttcattccatagttgtttatcttcaaaagttagaaaattaatcaaccataaaagtataaatagaaagaaaaacatcattt |
116 |
Q |
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| T |
19318916 |
ccaacagaagattcaatttcttcattctataattgattatcttcaaaacatagaaaattaatcaaccataaaactagaaatcgaaagaaaaacatcattt |
19318817 |
T |
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| Q |
117 |
tcttatattttcttctcttcactctcatcccccgtcatttcattctccttaa |
168 |
Q |
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| T |
19318816 |
tcttagattttcttctcctcactctcatccctcgtcatttcattctctttaa |
19318765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 168
Target Start/End: Original strand, 28729267 - 28729422
Alignment:
| Q |
13 |
atagccaacagaagcttccatttgttcattccatagttgtttatcttcaaaagttagaaaattaatcaaccataaaagtataaatagaaagaaaaacatc |
112 |
Q |
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|||||||||| |||||| |||| ||||||||||| |||||||||| |||| |||||||||| ||||||||||||| || |||| |||| |||||||| |
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| T |
28729267 |
atagccaacataagctttaatttcttcattccataattgtttatctctaaaacttagaaaattgatcaaccataaaactagaaattgaaataaaaacata |
28729366 |
T |
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| Q |
113 |
attttcttatattttcttctcttcactctcatcccccgtcatttcattctccttaa |
168 |
Q |
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|||||||||||||||||||||||||||||||||| | |||||||||||| |||| |
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| T |
28729367 |
tttttcttatattttcttctcttcactctcatcccttgacatttcattctctttaa |
28729422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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