View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19425_low_7 (Length: 653)

Name: NF19425_low_7
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19425_low_7
NF19425_low_7
[»] chr2 (3 HSPs)
chr2 (20-256)||(29466531-29466767)
chr2 (446-594)||(29466957-29467105)
chr2 (336-387)||(29466845-29466896)
[»] chr4 (7 HSPs)
chr4 (18-256)||(19109904-19110142)
chr4 (79-255)||(45098941-45099118)
chr4 (437-594)||(19110306-19110464)
chr4 (437-594)||(45099293-45099453)
chr4 (336-387)||(19110221-19110272)
chr4 (344-383)||(45099203-45099242)
chr4 (31-76)||(45098870-45098915)
[»] scaffold0726 (3 HSPs)
scaffold0726 (18-256)||(3632-3870)
scaffold0726 (440-590)||(4053-4203)
scaffold0726 (336-387)||(3950-4001)
[»] scaffold0557 (3 HSPs)
scaffold0557 (18-256)||(8467-8692)
scaffold0557 (446-594)||(8131-8279)
scaffold0557 (336-387)||(8337-8388)
[»] chr6 (6 HSPs)
chr6 (91-256)||(18717299-18717464)
chr6 (436-594)||(18716963-18717121)
chr6 (437-594)||(14465130-14465287)
chr6 (336-383)||(14465340-14465387)
chr6 (336-387)||(18717168-18717219)
chr6 (183-256)||(14465466-14465533)
[»] chr8 (1 HSPs)
chr8 (437-594)||(7963114-7963272)
[»] chr1 (2 HSPs)
chr1 (463-594)||(12227791-12227925)
chr1 (147-253)||(42956217-42956323)
[»] chr5 (1 HSPs)
chr5 (147-232)||(11232829-11232914)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 29466531 - 29466767
Alignment:
Q  20 gaacgaggagggaggatattacaacgggaaataaaaatgtgcagatggaaagtaatatgtatacttcaatgttatgagagggactcatatgacaatggtt 119  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  29466531 gaacgaggagggaggatattacaacaggaaacaaaaatgtgcagattgaaagtaatatgtatacttcaatgttatgagagggactcatataacaacggtt 29466630  T
Q  120 ctaagggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaacgtacatctcacttcaattaccatctatttcaagt 219  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  29466631 ctaaaggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaacgtgcatctcacttcaattaccatctatttcaatt 29466730  T
Q  220 gttcaattattttcaactgtcaattactcattttttg 256  Q
    |||||||||||||||||||||||||||||||||||||    
T  29466731 gttcaattattttcaactgtcaattactcattttttg 29466767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 446 - 594
Target Start/End: Original strand, 29466957 - 29467105
Alignment:
Q  446 tttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttact-ctgtcattattaatgttggtgcattttttatacctttctaatatat 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||    
T  29466957 tttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttactactgtcattgttaatgttggtgcattttttatacctttttaatatat 29467056  T
Q  545 ggttaaatttaacnnnnnnntatgatttggttagtaaatgaagacaataa 594  Q
    |||||||| ||||       ||||||||| ||||||||||||||||||||    
T  29467057 ggttaaatataac-aaaaaatatgatttgattagtaaatgaagacaataa 29467105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 29466845 - 29466896
Alignment:
Q  336 gaagtaacaactcatccatatctttatcatttttcaatttactctaattgca 387  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29466845 gaagtaacaactcatccctatctttatcatttttcaatttactctaattgca 29466896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 19109904 - 19110142
Alignment:
Q  18 atgaacgaggagggaggatattacaacgggaaataaaaatgtgcagatggaaagtaatatgtatacttcaatgttatgagagggactcatatgacaatgg 117  Q
    |||||||||||||||||||||||||||  |||| ||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19109904 atgaacgaggagggaggatattacaacatgaaacaaaaatgagcatattgaaagtaatatgtatacttcaatgttatgagagggactcatatgacaatgg 19110003  T
Q  118 ttctaagggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaacgtacatctcacttcaattaccatctatttcaa 217  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||    
T  19110004 ttctaaaggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaatgtgcatctcacttaaattaccatctatttcaa 19110103  T
Q  218 gtgttcaattattttcaactgtcaattactcattttttg 256  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  19110104 gtgttcaattattttcaactgtcaattgctcattttttg 19110142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 79 - 255
Target Start/End: Original strand, 45098941 - 45099118
Alignment:
Q  79 tatacttcaatgttatgagagggactcatatgacaatggttctaagggatctcatattatcttaactataaatttgtaaacattgat--agtgactattc 176  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||| ||||||| |||||||||| |||||||||||||||||||   | |||||||||    
T  45098941 tatacttcaatgttatgagagggactcatatgccaatggttggaagg-atctcatgttatcttaacgataaatttgtaaacattgactaactgactattc 45099039  T
Q  177 ttcaacaacgtacatctcacttcaattaccatctatttcaagtgttcaattattttcaactgtcaattactcatttttt 255  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  45099040 ttcaacaacgtgcatctcacttcaattaccatctatttcaagttttcaattattttcaactgtcaattactcatttttt 45099118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 437 - 594
Target Start/End: Original strand, 19110306 - 19110464
Alignment:
Q  437 aagaagttctttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttact-ctgtcattattaatgttggtgcattttttataccttt 535  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19110306 aagaatttttttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttactactgtcattattaatgttggtgcattttttataccttt 19110405  T
Q  536 ctaatatatggttaaatttaacnnnnnnntatgatttggttagtaaatgaagacaataa 594  Q
    ||||||||||||||||| ||||       ||||||||||||||||||||||||||||||    
T  19110406 ctaatatatggttaaatgtaacaaaaaaatatgatttggttagtaaatgaagacaataa 19110464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 437 - 594
Target Start/End: Original strand, 45099293 - 45099453
Alignment:
Q  437 aagaagttctttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttact-ctgtcattattaatgttggtgcattttttataccttt 535  Q
    |||||||| ||| | |||||||||||||||||||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  45099293 aagaagttttttagatcatttgttaatatacgtgatcatgttttaattgtcttttgtttattactgtcattattaatgttggtgcattttttataccttt 45099392  T
Q  536 cta---atatatggttaaatttaacnnnnnnntatgatttggttagtaaatgaagacaataa 594  Q
    |||   |||| ||||||||| ||||       ||||||| ||||||||||| ||||||||||    
T  45099393 ctaaatatatttggttaaatgtaac-aaaaaatatgattgggttagtaaataaagacaataa 45099453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 19110221 - 19110272
Alignment:
Q  336 gaagtaacaactcatccatatctttatcatttttcaatttactctaattgca 387  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19110221 gaagtaacaactcatccctatctttatcatttttcaatttactctaattgca 19110272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 344 - 383
Target Start/End: Original strand, 45099203 - 45099242
Alignment:
Q  344 aactcatccatatctttatcatttttcaatttactctaat 383  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  45099203 aactcatccatatctttatcatttttcgatttactctaat 45099242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 45098870 - 45098915
Alignment:
Q  31 gaggatattacaacgggaaataaaaatgtgcagatggaaagtaata 76  Q
    |||||||||||||| ||||| |||||| ||||||| ||||||||||    
T  45098870 gaggatattacaacaggaaacaaaaatatgcagattgaaagtaata 45098915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 3632 - 3870
Alignment:
Q  18 atgaacgaggagggaggatattacaacgggaaataaaaatgtgcagatggaaagtaatatgtatacttcaatgttatgagagggactcatatgacaatgg 117  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  3632 atgaacgaggagggaggatattacaacaggaaacaaaaatgtgcagattgaaagtaatatgtgtacttcaatgttatgagaggtactcatatgacaatgg 3731  T
Q  118 ttctaagggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaacgtacatctcacttcaattaccatctatttcaa 217  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  3732 ttctaaaggatcttatattatcttaattataaatttgtaaacattgatagtgactatttttcaacaacgtgcatctcactttaattaccatctatttcaa 3831  T
Q  218 gtgttcaattattttcaactgtcaattactcattttttg 256  Q
    || ||||||||||||||||||||||||||| ||||||||    
T  3832 gtattcaattattttcaactgtcaattactaattttttg 3870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 440 - 590
Target Start/End: Original strand, 4053 - 4203
Alignment:
Q  440 aagttctttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttact-ctgtcattattaatgttggtgcattttttatacctttcta 538  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4053 aagttttttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttactactgtcattattaatgttggtgcattttttatacctttcta 4152  T
Q  539 atatatggttaaatttaacnnnnnnntatgatttggttagtaaatgaagaca 590  Q
    ||||  |||| ||| ||||       ||||||||||||||||||||||||||    
T  4153 atattaggtttaatgtaac-aaaaaatatgatttggttagtaaatgaagaca 4203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 336 - 387
Target Start/End: Original strand, 3950 - 4001
Alignment:
Q  336 gaagtaacaactcatccatatctttatcatttttcaatttactctaattgca 387  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3950 gaagtaacaactcatccctatctttatcatttttcaatttactctaattgca 4001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 8692 - 8467
Alignment:
Q  18 atgaacgaggagggaggatattacaacgggaaataaaaatgtgcagatggaaagtaatatgtatacttcaatgttatgagagggactcatatgacaatgg 117  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||          
T  8692 atgaacgaggagggaggatattacaaccggaaacaaaaatgtgcatattgaaagtaatatgtatacttcaatgttatgagagggactcatatga------ 8599  T
Q  118 ttctaagggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaacgtacatctcacttcaattaccatctatttcaa 217  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8598 -------ggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaacgtgcatctcacttcaattaccatctatttcaa 8506  T
Q  218 gtgttcaattattttcaactgtcaattactcattttttg 256  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  8505 gtgttcaattattttcaactatcaattactcattttttg 8467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 446 - 594
Target Start/End: Complemental strand, 8279 - 8131
Alignment:
Q  446 tttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttact-ctgtcattattaatgttggtgcattttttatacctttctaatatat 544  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  8279 tttgggtaatttgttaatatacgtgatcattttttaattatcttttgtttactactgtcattattaatgttggtgcattttttacacctttctaatatat 8180  T
Q  545 ggttaaatttaacnnnnnnntatgatttggttagtaaatgaagacaataa 594  Q
    |||||||| ||||       ||||||||||||||||||||||||||||||    
T  8179 ggttaaatgtaac-aaaaaatatgatttggttagtaaatgaagacaataa 8131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 8388 - 8337
Alignment:
Q  336 gaagtaacaactcatccatatctttatcatttttcaatttactctaattgca 387  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  8388 gaagtaacaactcattcctatctttatcatttttcaatttactctaattgca 8337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 1e-83; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 18717464 - 18717299
Alignment:
Q  91 ttatgagagggactcatatgacaatggttctaagggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaacgtaca 190  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18717464 ttatgagagggactcatatgacaatagttctaagggatctcatattatcttaactataaatttgtaaacattgatagtgactattcttcaacaacgtgca 18717365  T
Q  191 tctcacttcaattaccatctatttcaagtgttcaattattttcaactgtcaattactcattttttg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18717364 tctcacttcaattaccatctatttcaagtgttcaattattttcaactgtcaattactcattttttg 18717299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 436 - 594
Target Start/End: Complemental strand, 18717121 - 18716963
Alignment:
Q  436 aaagaagttctttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttact-ctgtcattattaatgttggtgcattttttatacctt 534  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18717121 aaagaagttttttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttactactgtcattattaatgttggtgcattttttatacctt 18717022  T
Q  535 tctaatatatggttaaatttaacnnnnnnntatgatttggttagtaaatgaagacaataa 594  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  18717021 tctaatatatggttaaatttaac-aaaaaatatgatttggttagtaaatgaagacaataa 18716963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 437 - 594
Target Start/End: Complemental strand, 14465287 - 14465130
Alignment:
Q  437 aagaagttctttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttact-ctgtcattattaatgttggtgcattttttataccttt 535  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14465287 aagaagttttttgggtcatttgttaatatacgtgatcattttttaattttcttttgtttactactgtcattattaatgttggtgcattttttataccttt 14465188  T
Q  536 ctaatatatggttaaatttaacnnnnnnntatgatttggttagtaaatgaagacaataa 594  Q
    |||||||||||| |||| ||||       ||||||||||||||||||||||||||||||    
T  14465187 ctaatatatggtcaaatgtaac-aaaaaatatgatttggttagtaaatgaagacaataa 14465130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 336 - 383
Target Start/End: Complemental strand, 14465387 - 14465340
Alignment:
Q  336 gaagtaacaactcatccatatctttatcatttttcaatttactctaat 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14465387 gaagtaacaactcatccatatctttatcatttttcaatttactctaat 14465340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 18717219 - 18717168
Alignment:
Q  336 gaagtaacaactcatccatatctttatcatttttcaatttactctaattgca 387  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18717219 gaagtaacaactcatccctatctttatcatttttcaatttactctaattgca 18717168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 183 - 256
Target Start/End: Complemental strand, 14465533 - 14465466
Alignment:
Q  183 aacgtacatctcacttcaattaccatctatttcaagtgttcaattattttcaactgtcaattactcattttttg 256  Q
    ||||||||||||||||||||| |||||||      |||||||||||||||||||| ||||||||||||||||||    
T  14465533 aacgtacatctcacttcaatttccatcta------gtgttcaattattttcaactatcaattactcattttttg 14465466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 437 - 594
Target Start/End: Original strand, 7963114 - 7963272
Alignment:
Q  437 aagaagttctttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttact-ctgtcattattaatgttggtgca-ttttttatacctt 534  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  7963114 aagaagttttttgggtcatttgttaatatacgtgatcattttttaattctcttttgtttactactgtcattattaatgttggtgcatttttttatacctt 7963213  T
Q  535 tctaatatatggttaaatttaacnnnnnnntatgatttggttagtaaatgaagacaataa 594  Q
    |||||||||||||||||| ||||       |||||| |||||||||||||||||||||||    
T  7963214 tctaatatatggttaaatgtaac-aaaaaatatgatctggttagtaaatgaagacaataa 7963272  T

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Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 463 - 594
Target Start/End: Original strand, 12227791 - 12227925
Alignment:
Q  463 tatacgtgatcattttttaattctcttttgtttactc-tgtcattattaatgttggtgcattttttatacctttcta---atatatggttaaatttaacn 558  Q
    |||| |||||||| |||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||   |||| ||||||||| ||||     
T  12227791 tatatgtgatcatgttttaattgtcttttgtttactaatgtcattattaatgttggtgcattttttatacctttctaaatatatttggttaaatgtaac- 12227889  T
Q  559 nnnnnntatgatttggttagtaaatgaagacaataa 594  Q
          ||||||||||||||||||| ||||||||||    
T  12227890 aaaatatatgatttggttagtaaataaagacaataa 12227925  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 147 - 253
Target Start/End: Original strand, 42956217 - 42956323
Alignment:
Q  147 taaatttgtaaacattgatagtgactattcttcaacaacgtacatctcacttcaattaccatctatttcaagtgttcaattattttcaactgtcaattac 246  Q
    |||||||||||||||||| | ||| | |||||||| |||||  |||||||||  ||||||| ||||||||||||||||||||||||  | |||||||| |    
T  42956217 taaatttgtaaacattgacattgattgttcttcaataacgtgtatctcacttttattaccaactatttcaagtgttcaattatttttcattgtcaatttc 42956316  T
Q  247 tcatttt 253  Q
    | |||||    
T  42956317 ttatttt 42956323  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 147 - 232
Target Start/End: Complemental strand, 11232914 - 11232829
Alignment:
Q  147 taaatttgtaaacattgatagtgactattcttcaacaacgtacatctcacttcaattaccatctatttcaagtgttcaattatttt 232  Q
    |||||||||||||||||| | ||| | || ||||| ||| |  |||||||||  ||||||| ||||||||||||||||||||||||    
T  11232914 taaatttgtaaacattgacattgattgtttttcaataacatgtatctcacttttattaccaactatttcaagtgttcaattatttt 11232829  T

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