View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19425_low_70 (Length: 250)

Name: NF19425_low_70
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19425_low_70
NF19425_low_70
[»] chr3 (2 HSPs)
chr3 (1-239)||(28983912-28984143)
chr3 (131-222)||(34147421-34147512)
[»] chr4 (8 HSPs)
chr4 (125-222)||(45113342-45113439)
chr4 (125-222)||(27366439-27366536)
chr4 (127-222)||(30200784-30200879)
chr4 (123-222)||(48945028-48945127)
chr4 (125-222)||(1838770-1838867)
chr4 (20-126)||(27758320-27758427)
chr4 (21-91)||(35434398-35434469)
chr4 (118-154)||(2299592-2299628)
[»] chr1 (3 HSPs)
chr1 (122-222)||(34917338-34917438)
chr1 (125-222)||(34024748-34024845)
chr1 (123-168)||(43742339-43742384)
[»] chr5 (3 HSPs)
chr5 (128-222)||(1592512-1592606)
chr5 (122-222)||(7771196-7771296)
chr5 (126-222)||(7955094-7955190)
[»] chr8 (4 HSPs)
chr8 (125-222)||(18166286-18166383)
chr8 (125-222)||(15362407-15362504)
chr8 (128-222)||(20266147-20266241)
chr8 (128-222)||(21052776-21052870)
[»] chr7 (4 HSPs)
chr7 (125-222)||(21868242-21868339)
chr7 (122-222)||(4057860-4057960)
chr7 (127-222)||(47022927-47023025)
chr7 (11-114)||(13073957-13074059)
[»] chr2 (3 HSPs)
chr2 (127-222)||(604299-604393)
chr2 (124-222)||(12335724-12335822)
chr2 (38-104)||(35400932-35400998)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28984143 - 28983912
Alignment:
Q  1 aaatgaaagaattttgtgatcaagtagagttgcacttattacattccgttatttccctttactaattttacggttcagtttatttcctttcctagattta 100  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28984143 aaatgaaagaattttgtgatca-------ttgcacttattacattccgttatttccctttactaattttacggttcagtttatttcctttcctagattta 28984051  T
Q  101 tgattatgttattttccttttcttagggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggt 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  28984050 tgattatgttattttcctttccttagggggtgtttgtttgggagataaaaaatatatttatgagaataagggcattaaatacgatattcctatgtttggt 28983951  T
Q  201 agaagggaacaaaaataatatatccacccatacccctat 239  Q
    ||||| ||||||||| |||||| ||||||||||||||||    
T  28983950 agaagcgaacaaaaaaaatatacccacccatacccctat 28983912  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 131 - 222
Target Start/End: Original strand, 34147421 - 34147512
Alignment:
Q  131 tgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    |||||||||||||||| |||| |||||| ||| |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34147421 tgtttgtttgggagataaaaaatatattcctgggaataatggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatata 34147512  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 45113439 - 45113342
Alignment:
Q  125 agggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  45113439 agggggtgtttgtttgggagataaaaaatatattcctgagaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatata 45113342  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 27366536 - 27366439
Alignment:
Q  125 agggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    |||||||||||||||||||||| |||| |||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  27366536 agggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatata 27366439  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 30200879 - 30200784
Alignment:
Q  127 ggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    |||||||||||||||||||| |||| |||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30200879 ggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatata 30200784  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 48945127 - 48945028
Alignment:
Q  123 ttagggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    |||||||||||||||||||||||| |||| |||||| ||| |||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  48945127 ttagggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatata 48945028  T

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Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 1838867 - 1838770
Alignment:
Q  125 agggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    |||||||||||||||||||||| |||| |||||||||  |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  1838867 agggggtgtttgtttgggagataaaaaatatatttctaggaataagggcattaaatacgatattcctatatttggtagaagggaacaaaaataatata 1838770  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 27758427 - 27758320
Alignment:
Q  20 tcaagtagagttgcactt-attacattccgttatttccctttactaattttacggttcagtttatttcctttcctagatttatgattatgttattttcct 118  Q
    ||||||||||||| |||| ||||||||  ||||||||| ||| ||||||||| |||| |||||||||||||| ||| ||||||||||||||||||| |||    
T  27758427 tcaagtagagttgaacttgattacattaagttatttcctttttctaattttatggtttagtttatttccttttctaaatttatgattatgttatttccct 27758328  T
Q  119 tttcttag 126  Q
    ||||||||    
T  27758327 tttcttag 27758320  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 35434398 - 35434469
Alignment:
Q  21 caagtagagttgcactt-attacattccgttatttccctttactaattttacggttcagtttatttcctttc 91  Q
    ||||||||||||||||| ||||| ||  ||||||| || || |||||||||||||||| ||||||| |||||    
T  35434398 caagtagagttgcacttgattacgttaagttattttccatttctaattttacggttcaatttattttctttc 35434469  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 2299592 - 2299628
Alignment:
Q  118 ttttcttagggggtgtttgtttgggagatgaaaagta 154  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  2299592 ttttcttagggggcgtttgtttgggagataaaaagta 2299628  T

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Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 34917338 - 34917438
Alignment:
Q  122 cttagggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatat 221  Q
    ||||||||||||||||||||||||| |||| |||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34917338 cttagggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatat 34917437  T
Q  222 a 222  Q
    |    
T  34917438 a 34917438  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 34024748 - 34024845
Alignment:
Q  125 agggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    |||||||||||||||||||||| |||| |||||| ||| |||||| |  |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34024748 agggggtgtttgtttgggagataaaaaatatattcctgggaataaaggtattaaatacgatattcctatgtttggtagaagggaacaaaaataatata 34024845  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 43742384 - 43742339
Alignment:
Q  123 ttagggggtgtttgtttgggagatgaaaagtatatttctgagaata 168  Q
    |||||||| ||||||||||||||| ||||||||||| ||| |||||    
T  43742384 ttagggggcgtttgtttgggagataaaaagtatattcctgggaata 43742339  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 1592512 - 1592606
Alignment:
Q  128 gggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    ||||||||||||||||||| |||| |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1592512 gggtgtttgtttgggagataaaaaatatatttctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatata 1592606  T

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Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 7771296 - 7771196
Alignment:
Q  122 cttagggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatat 221  Q
    ||||||||||||||||||||||||| |||| ||||||  |  |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||    
T  7771296 cttagggggtgtttgtttgggagataaaaaatatattcttaggaataaggacattaaatacgatatttctatgtttggtagaaggaaacaaaaataatat 7771197  T
Q  222 a 222  Q
    |    
T  7771196 a 7771196  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 7955094 - 7955190
Alignment:
Q  126 gggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    ||||||||||||||||||||| |||| |||||| ||| | |||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  7955094 gggggtgtttgtttgggagataaaaaatatattcctgggtataagggcattaaatatgatattcctatgtttggtagaagggaacaaaaataatata 7955190  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 18166286 - 18166383
Alignment:
Q  125 agggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    |||||||||||||||||||||| |||| |||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18166286 agggggtgtttgtttgggagataaaaaatatattcctgtgaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatata 18166383  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 15362407 - 15362504
Alignment:
Q  125 agggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    |||||||||||||||||||||| |||| |||||| ||| |||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  15362407 agggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatatgatattcctatgtttggtagaagggaacaaaaataatata 15362504  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 20266147 - 20266241
Alignment:
Q  128 gggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    ||||||||||||||||||| |||| |||||||||  |||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  20266147 gggtgtttgtttgggagataaaaaatatatttctaggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatata 20266241  T

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Target: chr8; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 21052776 - 21052870
Alignment:
Q  128 gggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    ||||||||||||||||||| |||| |||||||||  |||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  21052776 gggtgtttgtttgggagataaaaaatatatttctaggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatata 21052870  T

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Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 125 - 222
Target Start/End: Complemental strand, 21868339 - 21868242
Alignment:
Q  125 agggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    |||||||||||||||||||||| |||| |||||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21868339 agggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatattcctatgtttggtagaagggaacaaaaataatata 21868242  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 4057860 - 4057960
Alignment:
Q  122 cttagggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatat 221  Q
    ||||||||||||||||||||||||| |||| |||||| ||| |||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  4057860 cttagggggtgtttgtttgggagataaaaaatatattcctgggaataagggcattaaatacgatatttctatgtttggtagaagggaacaaaaataatat 4057959  T
Q  222 a 222  Q
    |    
T  4057960 a 4057960  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 47022927 - 47023025
Alignment:
Q  127 ggggtgtttgtttgggagatg---aaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    ||||||||||||||||||||    |||| |||||| ||||||||||||  ||||||||| |||||| ||| ||||||||||||||||||||||||||||    
T  47022927 ggggtgtttgtttgggagatagtaaaaaatatattactgagaataagggtattaaatacaatattcctatatttggtagaagggaacaaaaataatata 47023025  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 13074059 - 13073957
Alignment:
Q  11 attttgtgatcaagtagagttgcactt-attacattccgttatttccctttactaattttacggttcagtttatttcctttcctagatttatgattatgt 109  Q
    ||||||||| |||||||||| |||||| |||||| || ||| | ||| ||| ||||||||| ||||  ||||||||||||||||| ||||| |||| ||     
T  13074059 attttgtgagcaagtagagt-gcacttgattacaatcggttttctcctttt-ctaattttatggttatgtttatttcctttcctaaatttacgattctgc 13073962  T
Q  110 tattt 114  Q
    |||||    
T  13073961 tattt 13073957  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 127 - 222
Target Start/End: Complemental strand, 604393 - 604299
Alignment:
Q  127 ggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    |||||||||||||||||||  |||| ||||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  604393 ggggtgtttgtttgggagaaaaaaa-tatatttatgagaataagggcattaaatatgatattcctatgtttggtagaagggaacaaaaataatata 604299  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 12335724 - 12335822
Alignment:
Q  124 tagggggtgtttgtttgggagatgaaaagtatatttctgagaataaggacattaaatacgatattcttatgtttggtagaagggaacaaaaataatata 222  Q
    ||||||||||||||||||||||| |||| |||||| |||  ||||||  ||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  12335724 tagggggtgtttgtttgggagataaaaaatatattcctggaaataagagcattaaatatgatattcctatgtttggtagaagggaacaaaaataatata 12335822  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 35400932 - 35400998
Alignment:
Q  38 attacattccgttatttccctttactaattttacggttcagtttatttcctttcctagatttatgat 104  Q
    ||||||||| |||| |||| ||| ||||||||| |||||| |||||||||||||||| |||||||||    
T  35400932 attacattcggttacttcctttttctaattttatggttcaatttatttcctttcctaaatttatgat 35400998  T

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