View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19425_low_74 (Length: 245)

Name: NF19425_low_74
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19425_low_74
NF19425_low_74
[»] chr8 (2 HSPs)
chr8 (33-110)||(11152062-11152139)
chr8 (175-230)||(11152204-11152259)
[»] chr2 (1 HSPs)
chr2 (39-97)||(18419300-18419358)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 11152062 - 11152139
Alignment:
Q  33 aataataaattaaaccatatgaaacaacgcatgtgaaacattgattaaacaatgtagtacaaatattgataggttata 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11152062 aataataaattaaaccatatgaaacaacgcatgtgaaacattgattaagcaatgtagtacaaatattgataggttata 11152139  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 11152204 - 11152259
Alignment:
Q  175 tactggatagccctagcacctctactaccccataccatgcctacgatgatacatgt 230  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11152204 tactgggtagccctagcacctctactaccccataccatgcctacgacgatacatgt 11152259  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 18419358 - 18419300
Alignment:
Q  39 aaattaaaccatatgaaacaacgcatgtgaaacattgattaaacaatgtagtacaaata 97  Q
    |||||||||||||||||||||  || ||||||| | |||||||||| ||||||| ||||    
T  18419358 aaattaaaccatatgaaacaagacaagtgaaacttagattaaacaaagtagtaccaata 18419300  T

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