View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_76 (Length: 240)
Name: NF19425_low_76
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 44367476 - 44367249
Alignment:
| Q |
1 |
ttcattggatgtagttggaaaactattttatagaaacctccagttatatatgtgtacaaagttttacgtttttagtgtatat----aaattaatctcttt |
96 |
Q |
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| T |
44367476 |
ttcattggatgtagttggaaaactattttatataaacctccagttatatatgtgtacaaagttttacgtttttagtgtatataaataaattaatctcttt |
44367377 |
T |
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| Q |
97 |
ttattatgtcataacaatagggttttgagttttgtcttgtatcnnnnnnnggttctagggtgtggattatgacaaagaagaaggttctgttttgcgtgtt |
196 |
Q |
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| T |
44367376 |
ttaatatgtcataacaatagggttttgagttttgtcttgtatctttttttcgttctagggtgtggattatgacaaagaagaaggttctgttttgcgtgtt |
44367277 |
T |
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| Q |
197 |
cgcgggaagaacattctaaagaatgaac |
224 |
Q |
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| T |
44367276 |
cgcgggaagaacattctaaagaatgaac |
44367249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 35119782 - 35119680
Alignment:
| Q |
119 |
ttttgagttttgtcttgtatcnnnnnnnggttctagggtgtggattatgacaaagaagaaggttctgttttgcgtgttcgcgggaagaacattctaaaga |
218 |
Q |
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| T |
35119782 |
ttttgagttttgtcttgtatctttgttttgttccagggtgtggattatgacaaagaag---gttctgttttgcgcattcgtgggaagaacattctagaga |
35119686 |
T |
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| Q |
219 |
atgaac |
224 |
Q |
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|||||| |
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| T |
35119685 |
atgaac |
35119680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 35119878 - 35119817
Alignment:
| Q |
44 |
ttatatatgtgtacaaagttttacgtttttagtgtatataaattaatctctttttattatgt |
105 |
Q |
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| T |
35119878 |
ttatatatgtgtacaaagtcttacactgtcggtgtatagaaattaatctctttttgttatgt |
35119817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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