View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_77 (Length: 240)
Name: NF19425_low_77
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_77 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 49 - 223
Target Start/End: Original strand, 30268304 - 30268478
Alignment:
| Q |
49 |
gggctgtttttgttgattaattgagtgcaggtgggattatgtagaattaggagggaatttttaccctgatatggatcgattggtagctttggaaaggggt |
148 |
Q |
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| T |
30268304 |
gggctgtttttgttgattaattgagtgcaggtgggattatgtagaattaggagggaatttttaccctgatatggatcgattggtagctttggaaaggggt |
30268403 |
T |
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| Q |
149 |
atgaaaacatgggctaattgggtggatgctaatattgacagaagtagaacccatgtgttatttcaggcaatttct |
223 |
Q |
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| T |
30268404 |
atgaaaacatgggctaattgggtggatgctaatattgacagaagtagaacccatgtgttatttcaggcaatttct |
30268478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 57 - 223
Target Start/End: Complemental strand, 29364166 - 29364000
Alignment:
| Q |
57 |
tttgttgattaattgagtgcaggtgggattatgtagaattaggagggaatttttaccctgatatggatcgattggtagctttggaaaggggtatgaaaac |
156 |
Q |
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| T |
29364166 |
tttgttgattaattgagtgcagatgggattatgtagaattaggagggaatttttaccctgatatggatcgattggtagctttggaaagaggtatgaaaac |
29364067 |
T |
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| Q |
157 |
atgggctaattgggtggatgctaatattgacagaagtagaacccatgtgttatttcaggcaatttct |
223 |
Q |
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| T |
29364066 |
atgggctaatagggtggatgccaatattgactgaagtagaacccatgtgttatttcaggtaatttct |
29364000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 25960926 - 25961028
Alignment:
| Q |
72 |
agtgcaggtgggattatgtagaattaggagggaatttttaccctgatatggatcgattggtagctttggaaaggggtatgaaaacatgggctaattgggt |
171 |
Q |
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| T |
25960926 |
agtgcaggtgggattatatagaattaggaggaaaatactaccaagatatggatcgtttagcagcaatggaaaggggtctaaaaacatgggctaattgggt |
25961025 |
T |
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| Q |
172 |
gga |
174 |
Q |
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||| |
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| T |
25961026 |
gga |
25961028 |
T |
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