View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19425_low_84 (Length: 225)

Name: NF19425_low_84
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19425_low_84
NF19425_low_84
[»] chr4 (16 HSPs)
chr4 (51-220)||(41135143-41135312)
chr4 (16-56)||(8418346-8418386)
chr4 (16-54)||(13498486-13498524)
chr4 (16-54)||(28298371-28298409)
chr4 (17-59)||(32899219-32899261)
chr4 (19-61)||(39797426-39797468)
chr4 (30-59)||(32898972-32899001)
chr4 (19-55)||(3085443-3085479)
chr4 (16-55)||(11469237-11469277)
chr4 (16-55)||(11522184-11522224)
chr4 (16-56)||(20455181-20455221)
chr4 (16-56)||(24754075-24754115)
chr4 (22-54)||(32112137-32112169)
chr4 (17-53)||(36901111-36901147)
chr4 (16-56)||(54623798-54623838)
chr4 (30-58)||(55562860-55562888)
[»] chr7 (16 HSPs)
chr7 (19-60)||(30895553-30895594)
chr7 (16-53)||(31803120-31803157)
chr7 (16-54)||(4856805-4856843)
chr7 (19-57)||(35888308-35888346)
chr7 (19-61)||(41444466-41444508)
chr7 (16-53)||(19292839-19292876)
chr7 (16-53)||(19845669-19845706)
chr7 (16-53)||(20951002-20951039)
chr7 (16-53)||(21119557-21119594)
chr7 (20-56)||(7400126-7400162)
chr7 (31-59)||(23109343-23109371)
chr7 (16-56)||(29177252-29177292)
chr7 (16-60)||(37913070-37913114)
chr7 (16-60)||(43081245-43081289)
chr7 (16-56)||(44547423-44547463)
chr7 (16-56)||(46415005-46415045)
[»] chr8 (9 HSPs)
chr8 (16-55)||(5784148-5784187)
chr8 (16-54)||(29806222-29806260)
chr8 (16-54)||(34490516-34490554)
chr8 (16-54)||(36131251-36131289)
chr8 (16-54)||(40784890-40784928)
chr8 (30-59)||(5162579-5162608)
chr8 (16-56)||(2152240-2152280)
chr8 (31-63)||(18111706-18111738)
chr8 (17-53)||(41014504-41014540)
[»] scaffold0039 (1 HSPs)
scaffold0039 (16-58)||(104061-104103)
[»] chr3 (21 HSPs)
chr3 (16-64)||(33212385-33212434)
chr3 (16-64)||(53164152-53164200)
chr3 (16-63)||(17753535-17753582)
chr3 (16-63)||(19054855-19054902)
chr3 (19-61)||(10044834-10044876)
chr3 (17-55)||(23776495-23776533)
chr3 (16-54)||(28673294-28673332)
chr3 (30-64)||(46845220-46845254)
chr3 (17-54)||(2993258-2993295)
chr3 (16-53)||(15095198-15095235)
chr3 (16-53)||(21458982-21459019)
chr3 (16-57)||(23700785-23700826)
chr3 (16-57)||(23719240-23719281)
chr3 (16-57)||(23737696-23737737)
chr3 (16-53)||(27646306-27646343)
chr3 (16-61)||(43868095-43868140)
chr3 (16-53)||(50517522-50517559)
chr3 (30-58)||(12906146-12906174)
chr3 (16-56)||(32963105-32963145)
chr3 (16-56)||(33868445-33868485)
chr3 (16-60)||(46845492-46845536)
[»] chr1 (7 HSPs)
chr1 (30-63)||(28886118-28886151)
chr1 (16-56)||(22567063-22567103)
chr1 (16-55)||(229409-229448)
chr1 (16-61)||(25509201-25509246)
chr1 (16-61)||(42276161-42276206)
chr1 (16-53)||(48022906-48022943)
chr1 (16-57)||(50008483-50008524)
[»] chr6 (5 HSPs)
chr6 (16-56)||(9341835-9341875)
chr6 (16-57)||(23604456-23604497)
chr6 (16-61)||(34915543-34915588)
chr6 (16-56)||(5457409-5457449)
chr6 (16-63)||(25045643-25045691)
[»] chr5 (12 HSPs)
chr5 (16-56)||(14571284-14571324)
chr5 (30-61)||(7940444-7940475)
chr5 (16-55)||(22657766-22657805)
chr5 (16-54)||(35547260-35547298)
chr5 (16-54)||(40643093-40643131)
chr5 (16-54)||(41418310-41418348)
chr5 (16-53)||(8145142-8145179)
chr5 (16-61)||(41641087-41641132)
chr5 (31-59)||(4976022-4976050)
chr5 (16-48)||(4985116-4985148)
chr5 (27-55)||(26674616-26674644)
chr5 (27-55)||(26946222-26946250)
[»] chr2 (5 HSPs)
chr2 (16-55)||(8990202-8990241)
chr2 (17-55)||(6027616-6027654)
chr2 (16-53)||(11852185-11852222)
chr2 (16-57)||(17665519-17665560)
chr2 (16-60)||(26322293-26322337)
[»] scaffold0250 (1 HSPs)
scaffold0250 (16-54)||(9426-9464)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 51 - 220
Target Start/End: Original strand, 41135143 - 41135312
Alignment:
Q  51 gtatattttttatacgtacccaaaaccttacaagacatatagcataatcacaaaaacaacattcctttagaaaacatcaattctaccccacaatatatat 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41135143 gtatattttttatacgtacccaaaaccttacaagacatatagcataatcacaaaaacaacattcctttagaaaacatcaattctaccccacaatatatat 41135242  T
Q  151 gtacaattttagtgtctatgtaggagaacaatgtgcttcaactaataactaatgcatttggatttccacc 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41135243 gtacaattttagtgtctatgtaggagaacaatgtgcttcaactaataactaatgcatttggatttccacc 41135312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 8418346 - 8418386
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  8418346 ttctcaaaaaggttttataattagggagggaggtagtatat 8418386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 13498486 - 13498524
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtat 54  Q
    |||||||||| || |||||||||||||||||||||||||    
T  13498486 ttctcaaaaacatcttataattagggacggaggtagtat 13498524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 28298371 - 28298409
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtat 54  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  28298371 ttctcaaaaggatcttataattagggacggaggtagtat 28298409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 32899219 - 32899261
Alignment:
Q  17 tctcaaaaagattttataattagggacggaggtagtatatttt 59  Q
    |||||||| | | ||||||||||||||||||||||||||||||    
T  32899219 tctcaaaagggtcttataattagggacggaggtagtatatttt 32899261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 39797468 - 39797426
Alignment:
Q  19 tcaaaaagattttataattagggacggaggtagtatatttttt 61  Q
    |||||||| | ||||||||||||||||||||||||||| ||||    
T  39797468 tcaaaaaggtcttataattagggacggaggtagtatatatttt 39797426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 59
Target Start/End: Complemental strand, 32899001 - 32898972
Alignment:
Q  30 ttataattagggacggaggtagtatatttt 59  Q
    ||||||||||||||||||||||||||||||    
T  32899001 ttataattagggacggaggtagtatatttt 32898972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 3085479 - 3085443
Alignment:
Q  19 tcaaaaagattttataattagggacggaggtagtata 55  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  3085479 tcaaaaggatcttataattagggacggaggtagtata 3085443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 11469237 - 11469277
Alignment:
Q  16 ttctcaaaaaga-ttttataattagggacggaggtagtata 55  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  11469237 ttctcaaaaagggttttataattagggacggaggtagtata 11469277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 11522224 - 11522184
Alignment:
Q  16 ttctcaaaaaga-ttttataattagggacggaggtagtata 55  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  11522224 ttctcaaaaagggttttataattagggacggaggtagtata 11522184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 20455181 - 20455221
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||| | | |||||||||||||||||||||||||||    
T  20455181 ttctcaaaagggtcttataattagggacggaggtagtatat 20455221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 24754115 - 24754075
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||| ||| ||||||||||||||||||| |||||||    
T  24754115 ttctcaaaaggatcttataattagggacggagggagtatat 24754075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 32112169 - 32112137
Alignment:
Q  22 aaaagattttataattagggacggaggtagtat 54  Q
    ||||||| |||||||||||||||||||||||||    
T  32112169 aaaagatcttataattagggacggaggtagtat 32112137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 36901111 - 36901147
Alignment:
Q  17 tctcaaaaagattttataattagggacggaggtagta 53  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  36901111 tctcaaaaggatcttataattagggacggaggtagta 36901147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 54623838 - 54623798
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||| ||| ||||||||||||||||||||| |||||    
T  54623838 ttctcaaaaggatcttataattagggacggaggtaatatat 54623798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 55562888 - 55562860
Alignment:
Q  30 ttataattagggacggaggtagtatattt 58  Q
    |||||||||||||||||||||||||||||    
T  55562888 ttataattagggacggaggtagtatattt 55562860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 30895594 - 30895553
Alignment:
Q  19 tcaaaaagattttataattagggacggaggtagtatattttt 60  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  30895594 tcaaaaagatcttataattagggacggaggtagtatattttt 30895553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 31803120 - 31803157
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta 53  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  31803120 ttctcaaaaagatcttataattagggacggaggtagta 31803157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 4856843 - 4856805
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtat 54  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  4856843 ttctcaaaaagatattataattagggacggagatagtat 4856805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 35888346 - 35888308
Alignment:
Q  19 tcaaaaagattttataattagggacggaggtagtatatt 57  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  35888346 tcaaaaaggtcttataattagggacggaggtagtatatt 35888308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 41444466 - 41444508
Alignment:
Q  19 tcaaaaagattttataattagggacggaggtagtatatttttt 61  Q
    |||||| ||| |||||||||||||||||||||||| |||||||    
T  41444466 tcaaaaggatcttataattagggacggaggtagtacatttttt 41444508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 19292876 - 19292839
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta 53  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  19292876 ttctcaaaaggatcttataattagggacggaggtagta 19292839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 19845669 - 19845706
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta 53  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  19845669 ttctcaaaaggatcttataattagggacggaggtagta 19845706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 20951002 - 20951039
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta 53  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  20951002 ttctcaaaaagatcttataattaaggacggaggtagta 20951039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 21119594 - 21119557
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta 53  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  21119594 ttctcaaaaggatcttataattagggacggaggtagta 21119557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 7400162 - 7400126
Alignment:
Q  20 caaaaagattttataattagggacggaggtagtatat 56  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  7400162 caaaaggatcttataattagggacggaggtagtatat 7400126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 23109343 - 23109371
Alignment:
Q  31 tataattagggacggaggtagtatatttt 59  Q
    |||||||||||||||||||||||||||||    
T  23109343 tataattagggacggaggtagtatatttt 23109371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 29177252 - 29177292
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||| ||| ||||||||||||||||||| |||||||    
T  29177252 ttctcaaaaggatcttataattagggacggagggagtatat 29177292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 37913114 - 37913070
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatattttt 60  Q
    ||||||||| ||| ||||||||||||||||| ||||||| |||||    
T  37913114 ttctcaaaatgatcttataattagggacggaagtagtattttttt 37913070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 43081289 - 43081245
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatattttt 60  Q
    ||||||||| ||| ||||||||||||||| |||||||| ||||||    
T  43081289 ttctcaaaaggatcttataattagggacgaaggtagtaaattttt 43081245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 44547463 - 44547423
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||||| | ||||||||||||||||||| |||||||    
T  44547463 ttctcaaaaaggtcttataattagggacggagggagtatat 44547423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 46415005 - 46415045
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||| | | |||||||||||||||||||||||||||    
T  46415005 ttctcaaaatggtcttataattagggacggaggtagtatat 46415045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 5784148 - 5784187
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtata 55  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  5784148 ttctcaaaaagatcttataattagggacggaggtagtata 5784187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 29806222 - 29806260
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtat 54  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  29806222 ttctcaaaagggttttataattagggacggaggtagtat 29806260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 34490554 - 34490516
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtat 54  Q
    ||||||||||||| ||||||||||||||||||| |||||    
T  34490554 ttctcaaaaagatcttataattagggacggagggagtat 34490516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 36131251 - 36131289
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtat 54  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  36131251 ttctcgaaaagatcttataattagggacggaggtagtat 36131289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 40784928 - 40784890
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtat 54  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  40784928 ttctcaaaaaggtcttataattagggacggaggtagtat 40784890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 5162579 - 5162608
Alignment:
Q  30 ttataattagggacggaggtagtatatttt 59  Q
    ||||||||||||||||||||||||||||||    
T  5162579 ttataattagggacggaggtagtatatttt 5162608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 2152240 - 2152280
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||| | | |||||||||||||||||||||||||||    
T  2152240 ttctcaaaagggtcttataattagggacggaggtagtatat 2152280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 18111738 - 18111706
Alignment:
Q  31 tataattagggacggaggtagtatattttttat 63  Q
    ||||||||||||| |||||||||||||||||||    
T  18111738 tataattagggacagaggtagtatattttttat 18111706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 41014540 - 41014504
Alignment:
Q  17 tctcaaaaagattttataattagggacggaggtagta 53  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  41014540 tctcaaaaagatcttataattagggacggagggagta 41014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 104061 - 104103
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatattt 58  Q
    ||||||||||||| |||||||||||||||||||||||| ||||    
T  104061 ttctcaaaaagatcttataattagggacggaggtagtaaattt 104103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 33212434 - 33212385
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagt-atattttttata 64  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  33212434 ttctcaaaaggatcttataattagggacggaggtagtaatattttttata 33212385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 53164200 - 53164152
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatattttttata 64  Q
    ||||||||| ||| |||||||||||||||||||||||| | ||||||||    
T  53164200 ttctcaaaaggatcttataattagggacggaggtagtacaatttttata 53164152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 17753535 - 17753582
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatattttttat 63  Q
    |||||| |||| ||||||||||||||||||||||||||  ||||||||    
T  17753535 ttctcagaaaggttttataattagggacggaggtagtagtttttttat 17753582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 19054855 - 19054902
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatattttttat 63  Q
    |||||| |||| ||||||||||||||||||||||||||  ||||||||    
T  19054855 ttctcagaaaggttttataattagggacggaggtagtagtttttttat 19054902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 10044876 - 10044834
Alignment:
Q  19 tcaaaaagattttataattagggacggaggtagtatatttttt 61  Q
    |||||| ||| ||||||||||||||||||| ||||||||||||    
T  10044876 tcaaaaggatcttataattagggacggagggagtatatttttt 10044834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 23776495 - 23776533
Alignment:
Q  17 tctcaaaaagattttataattagggacggaggtagtata 55  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  23776495 tctcaaaaaaatcttataattagggacggaggtagtata 23776533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 28673294 - 28673332
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtat 54  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  28673294 ttctcaaaaggatcttataattagggacggaggtagtat 28673332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 46845254 - 46845220
Alignment:
Q  30 ttataattagggacggaggtagtatattttttata 64  Q
    |||||||||||||||||||||||| ||||||||||    
T  46845254 ttataattagggacggaggtagtacattttttata 46845220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 2993295 - 2993258
Alignment:
Q  17 tctcaaaaagattttataattagggacggaggtagtat 54  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  2993295 tctcaaaatgatcttataattagggacggaggtagtat 2993258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 15095235 - 15095198
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta 53  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  15095235 ttctcaaaagggttttataattagggacggaggtagta 15095198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 21459019 - 21458982
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta 53  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  21459019 ttctcaaaaggatcttataattagggacggaggtagta 21458982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 23700785 - 23700826
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatatt 57  Q
    ||||||||||| | ||||||||||||||||||| ||||||||    
T  23700785 ttctcaaaaaggtcttataattagggacggagggagtatatt 23700826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 23719240 - 23719281
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatatt 57  Q
    ||||||||||| | ||||||||||||||||||| ||||||||    
T  23719240 ttctcaaaaaggtcttataattagggacggagggagtatatt 23719281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 23737696 - 23737737
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatatt 57  Q
    ||||||||||| | ||||||||||||||||||| ||||||||    
T  23737696 ttctcaaaaaggtcttataattagggacggagggagtatatt 23737737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 27646306 - 27646343
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta 53  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  27646306 ttctcaaaaggatcttataattagggacggaggtagta 27646343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 43868140 - 43868095
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatatttttt 61  Q
    ||||||||| | | ||||||||||||||||||| ||||||||||||    
T  43868140 ttctcaaaagggtcttataattagggacggagggagtatatttttt 43868095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 50517522 - 50517559
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta 53  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  50517522 ttctcaaaaggatcttataattagggacggaggtagta 50517559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 58
Target Start/End: Complemental strand, 12906174 - 12906146
Alignment:
Q  30 ttataattagggacggaggtagtatattt 58  Q
    |||||||||||||||||||||||||||||    
T  12906174 ttataattagggacggaggtagtatattt 12906146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 32963105 - 32963145
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||| ||| ||||||||||||||||||| |||||||    
T  32963105 ttctcaaaaggatcttataattagggacggagggagtatat 32963145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 33868485 - 33868445
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||| ||| ||||||||||||||||||| |||||||    
T  33868485 ttctcaaaaggatcttataattagggacggagggagtatat 33868445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 46845492 - 46845536
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatattttt 60  Q
    ||||||||| | | ||||||||||||||||||||||||| |||||    
T  46845492 ttctcaaaagggtcttataattagggacggaggtagtatcttttt 46845536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 28886118 - 28886151
Alignment:
Q  30 ttataattagggacggaggtagtatattttttat 63  Q
    ||||||||||||||||||||||||||||||||||    
T  28886118 ttataattagggacggaggtagtatattttttat 28886151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 22567103 - 22567063
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  22567103 ttctcaaaaggatcttataattagggacggaggtagtatat 22567063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 229409 - 229448
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtata 55  Q
    ||||||||| ||||||||||||||| ||||||||||||||    
T  229409 ttctcaaaaggattttataattaggaacggaggtagtata 229448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 25509246 - 25509201
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatatttttt 61  Q
    ||||||||| | | |||||||||||||||||||||||||| |||||    
T  25509246 ttctcaaaagggtcttataattagggacggaggtagtataattttt 25509201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 42276161 - 42276206
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatatttttt 61  Q
    ||||||||| | | ||||||||||||||||||||||||| ||||||    
T  42276161 ttctcaaaagggtcttataattagggacggaggtagtatgtttttt 42276206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 48022943 - 48022906
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta 53  Q
    ||||||||||| || |||||||||||||||||||||||    
T  48022943 ttctcaaaaaggttctataattagggacggaggtagta 48022906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 50008483 - 50008524
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatatt 57  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||    
T  50008483 ttctcaaaatgatcttataattagggacggagggagtatatt 50008524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 9341875 - 9341835
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  9341875 ttctcaaaaggatcttataattagggacggaggtagtatat 9341835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 23604497 - 23604456
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatatt 57  Q
    ||||||||| | | ||||||||||||||||||||||||||||    
T  23604497 ttctcaaaagggtcttataattagggacggaggtagtatatt 23604456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 34915543 - 34915588
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatatttttt 61  Q
    ||||||||| | | ||||||||||||||||||||||||| ||||||    
T  34915543 ttctcaaaagggtcttataattagggacggaggtagtatttttttt 34915588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 5457449 - 5457409
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    ||||||||||| | ||||||||||||||||||| |||||||    
T  5457449 ttctcaaaaaggtcttataattagggacggagggagtatat 5457409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 25045643 - 25045691
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta-tattttttat 63  Q
    ||||||||| | | |||||||||||||||||||||||| ||||||||||    
T  25045643 ttctcaaaagggtcttataattagggacggaggtagtattattttttat 25045691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 14571324 - 14571284
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatat 56  Q
    |||||||||| || |||||||||||||||||||||||||||    
T  14571324 ttctcaaaaatatcttataattagggacggaggtagtatat 14571284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 7940475 - 7940444
Alignment:
Q  30 ttataattagggacggaggtagtatatttttt 61  Q
    ||||||||||||||||||||||||||||||||    
T  7940475 ttataattagggacggaggtagtatatttttt 7940444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 22657805 - 22657766
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtata 55  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  22657805 ttctcaaaaggatcttataattagggacggaggtagtata 22657766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 35547298 - 35547260
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtat 54  Q
    |||||||||| || |||||||||||||||||||||||||    
T  35547298 ttctcaaaaaaatcttataattagggacggaggtagtat 35547260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 40643131 - 40643093
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtat 54  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  40643131 ttctcaaaaggatcttataattagggacggaggtagtat 40643093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 41418348 - 41418310
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtat 54  Q
    ||||||||||||| ||| |||||||||||||||||||||    
T  41418348 ttctcaaaaagatcttacaattagggacggaggtagtat 41418310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 8145142 - 8145179
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta 53  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  8145142 ttctcaaaaatgttttataattagggacggaggtagta 8145179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 41641132 - 41641087
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatatttttt 61  Q
    ||||||||| ||| ||||||||||||||||||| ||||| ||||||    
T  41641132 ttctcaaaatgatcttataattagggacggagggagtatttttttt 41641087  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 4976050 - 4976022
Alignment:
Q  31 tataattagggacggaggtagtatatttt 59  Q
    |||||||||||||||||||||||||||||    
T  4976050 tataattagggacggaggtagtatatttt 4976022  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 4985116 - 4985148
Alignment:
Q  16 ttctcaaaaagattttataattagggacggagg 48  Q
    ||||||||||| |||||||||||||||||||||    
T  4985116 ttctcaaaaaggttttataattagggacggagg 4985148  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 26674616 - 26674644
Alignment:
Q  27 attttataattagggacggaggtagtata 55  Q
    |||||||||||||||||||||||||||||    
T  26674616 attttataattagggacggaggtagtata 26674644  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 26946222 - 26946250
Alignment:
Q  27 attttataattagggacggaggtagtata 55  Q
    |||||||||||||||||||||||||||||    
T  26946222 attttataattagggacggaggtagtata 26946250  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 8990241 - 8990202
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtata 55  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  8990241 ttctcaaaaagatcttataattagggacggagggagtata 8990202  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 6027654 - 6027616
Alignment:
Q  17 tctcaaaaagattttataattagggacggaggtagtata 55  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  6027654 tctcaaaaggatcttataattagggacggaggtagtata 6027616  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 11852185 - 11852222
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagta 53  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  11852185 ttctcaaaaggatcttataattagggacggaggtagta 11852222  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 17665560 - 17665519
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatatt 57  Q
    ||||||||||| | |||||||||||||||||| |||||||||    
T  17665560 ttctcaaaaaggtcttataattagggacggagctagtatatt 17665519  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 26322293 - 26322337
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtatattttt 60  Q
    ||||||||| | | ||||||||||||||||||||||||| |||||    
T  26322293 ttctcaaaagggtcttataattagggacggaggtagtatgttttt 26322337  T

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Target: scaffold0250 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 9426 - 9464
Alignment:
Q  16 ttctcaaaaagattttataattagggacggaggtagtat 54  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  9426 ttctcaaaaggatcttataattagggacggaggtagtat 9464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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