View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_85 (Length: 223)
Name: NF19425_low_85
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 5828903 - 5828714
Alignment:
| Q |
15 |
aatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatca |
114 |
Q |
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| T |
5828903 |
aatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatca |
5828804 |
T |
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| Q |
115 |
acaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtt |
204 |
Q |
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| T |
5828803 |
acaccacatgcttccacacattgatctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtt |
5828714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 5822974 - 5823163
Alignment:
| Q |
15 |
aatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatca |
114 |
Q |
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| T |
5822974 |
aatattgggacacttagagaaacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatca |
5823073 |
T |
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| Q |
115 |
acaccacatgcttccacacattggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcggtt |
204 |
Q |
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| T |
5823074 |
acaccacatgcttctacacattcgtctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtt |
5823163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 70 - 200
Target Start/End: Original strand, 5832907 - 5833037
Alignment:
| Q |
70 |
ggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattggtctgtctctatgtatgctgctattctctcca |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||| |
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| T |
5832907 |
ggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacacattgatctgtctctatgtactctgaaattctctcca |
5833006 |
T |
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| Q |
170 |
ccataacttcagatgttcgacattgatactc |
200 |
Q |
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| T |
5833007 |
ctataacttcagatgttctacattgatactc |
5833037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 201
Target Start/End: Original strand, 24038492 - 24038658
Alignment:
| Q |
35 |
aacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacaca |
134 |
Q |
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||||||||| |||||||| ||| |||||| | ||||||| || ||||| || ||||| || ||| || | || ||||| |||||||||| |||||| |
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| T |
24038492 |
aacaagatgatgaacaaagtttggctgtgaattgtggctcaagcaatgcatcggaagaaattccgacaaaattcctttcaactccacatgctttcacaca |
24038591 |
T |
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| Q |
135 |
ttggtctgtctctatgtatgctgctattctctccaccataacttcagatgttcgacattgatactcg |
201 |
Q |
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||| ||||||||||||||| | || |||| ||||| || ||||| ||||| | ||||||||||||| |
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| T |
24038592 |
ttgatctgtctctatgtatcccgccattcgctccaacactacttctgatgtcctacattgatactcg |
24038658 |
T |
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