View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_86 (Length: 223)
Name: NF19425_low_86
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_86 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 14034597 - 14034755
Alignment:
| Q |
18 |
ctttcaaagaccaggtacatcaaattttccaaatttaacaaaattagtatatatagcttttaaggggtttttatgcttaagtatactgtt--nnnnnnnn |
115 |
Q |
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| T |
14034597 |
ctttcaaagaccaggtacatcaaattttccaaatttaacaaaattagtatatatagcttttaaggtgtttttatgcttaagtatgctgttaaaataaaaa |
14034696 |
T |
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| Q |
116 |
ttaggtgaatttagaggtgtcaaaatggattactctataagagtcggtccgccaaacccaaaa |
178 |
Q |
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| T |
14034697 |
ttaggtgaatttagaggtgtca----ggattactctataagagtcggtccgccaaacccaaaa |
14034755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 14034779 - 14034818
Alignment:
| Q |
176 |
aaatacttggaaatagatccttttctacctatattcttcg |
215 |
Q |
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| T |
14034779 |
aaatacttggaaatagatccttttctacctttattattcg |
14034818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 14045670 - 14045635
Alignment:
| Q |
18 |
ctttcaaagaccaggtacatcaaattttccaaattt |
53 |
Q |
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| T |
14045670 |
ctttcaaagaccaggtacatcacattttccaaattt |
14045635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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