View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19425_low_9 (Length: 645)
Name: NF19425_low_9
Description: NF19425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19425_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 5e-67; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 441 - 632
Target Start/End: Original strand, 31069112 - 31069309
Alignment:
| Q |
441 |
atccgcaggtgtgatgaatctatgaggaactccatagtgaatctataggccgaccgacatgtatatatttcatcgttgctgaatttctacactagtgcat |
540 |
Q |
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| T |
31069112 |
atccgcaggtgagatgaatcaatgaggaactccatagtgaatctataggccgaccgaactgtatatatttcatccttgctcaatttctacaccagtgcat |
31069211 |
T |
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| Q |
541 |
cttcattattaatatgcataataggtattctttttcactc--tatatgtcatgctgttcatcac----attccgaatcaagtccatcacgacactcct |
632 |
Q |
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| T |
31069212 |
cttcattattaatatgcataataggtgttctttttcactctatatatgtcatgttgttcatcacatatattccgaatcaagtccatcacaacactcct |
31069309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 278 - 442
Target Start/End: Original strand, 31068910 - 31069083
Alignment:
| Q |
278 |
tgcatgtgcccttgtgcatccgtgaaagcaatgccagtcatcctca---------tcgcagtacggacaacttgatgtgcaaatgacttctctctgaacc |
368 |
Q |
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| T |
31068910 |
tgcacgtgcccttgtgcatccgagaaagcaatgtcagccatcctcaatcaaaacatcgcagtacgaacaacttgatgtgcaaatgacttctctctgaacc |
31069009 |
T |
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| Q |
369 |
aatttttcccgtgttgggatgcatcccctcgttatctgccacatgaatactttaaccttctgtgcaatttacat |
442 |
Q |
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| T |
31069010 |
aatttttcccgtgttgggatgcacccccttgttatccgccacaggaatactttaaccttgtgtgaaatttacat |
31069083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 445 - 542
Target Start/End: Original strand, 31055283 - 31055380
Alignment:
| Q |
445 |
gcaggtgtgatgaatctatgaggaactccatagtgaatctataggccgaccgacatgtatatatttcatcgttgctgaatttctacactagtgcatct |
542 |
Q |
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| T |
31055283 |
gcaggtgtgatgaatctatgagggactccatagtgaatctataggccgaccgagctgtatattttctatccttgctggatttctacaccagtccatct |
31055380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 502 - 609
Target Start/End: Original strand, 31042242 - 31042351
Alignment:
| Q |
502 |
tatatatttcatcgttgctgaatttctacactagtgcatcttcattattaatatgcataataggtattctt-tttcactctatatgtcatgct-gttcat |
599 |
Q |
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| T |
31042242 |
tatattttccatccttgctgaatttctacaccagtgcatcttcattattaatttgcatgataggcattcttgtcacactatatatgtcatgctggttcat |
31042341 |
T |
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| Q |
600 |
cacattccga |
609 |
Q |
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| T |
31042342 |
cacattccga |
31042351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 31097723 - 31097775
Alignment:
| Q |
189 |
aggagctgaattgcattggaggttgtggtgagcaagagaaaacattgccttaa |
241 |
Q |
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| T |
31097723 |
aggagctgaattgtgttggaggttgtggtgagcaagaaaaaacattgcattaa |
31097775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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