View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19426_high_1 (Length: 544)
Name: NF19426_high_1
Description: NF19426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19426_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 14 - 489
Target Start/End: Complemental strand, 4019362 - 4018889
Alignment:
| Q |
14 |
agaacattataaaatcatgtgtaatat--gtcacataattttgtacaaggttgtcttattatattgattaatttatctgatggaaatatattttgttttt |
111 |
Q |
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| T |
4019362 |
agaacattataaaatcatgtgtaatatatgtcacataattttgtacaaggttgtcttattatattgattaatttatctgatggaaatatattttgttttt |
4019263 |
T |
|
| Q |
112 |
cttaggcttttagacaaatggctggttatgatccatgtacagaaaaatatgcagaagtttactacaataggccagatgttcaaaaagcacttcatgcaaa |
211 |
Q |
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| T |
4019262 |
cttaggcttttagacaaatggctggttatgatccatgtacagaaaaatatgcagaagtttactacaataggccagatgttcaaaaagcacttcatgcaaa |
4019163 |
T |
|
| Q |
212 |
cacaacaggcattccttataagtggactgcttgcaggtgaacttttcatgacacatatattcaagttatatgagtgattatttattgtacaatttaaaga |
311 |
Q |
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| T |
4019162 |
cacaacaggcattccttataagtggactgcttgcaggtgaacttttcatgacacatatattcaagttatatgagtgattatttattgtacaatttaaaga |
4019063 |
T |
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| Q |
312 |
ttggttaataattaattaatcataagtttcttttcatttgatgcagtgaagttttgaatagaaactggaatgatacagatgtatctgttcttccactata |
411 |
Q |
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| T |
4019062 |
ttggttaataat----taatcataagtttcttttcatttgatgcagtgaagttttgaatagaaactggaatgatacagatgtatctgttcttccactata |
4018967 |
T |
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| Q |
412 |
tagagagttgatagctcatggtgtaagagtttgggttttcaggttggttttgaaatgcatatataaatttcttctttt |
489 |
Q |
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| T |
4018966 |
tagagagttgatagctcatggtgtaagagtttgggttttcaggttggttttcaaatgcatatataaatttcttctttt |
4018889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 490 - 539
Target Start/End: Complemental strand, 4018847 - 4018798
Alignment:
| Q |
490 |
acagaaaaatataaaattgaaattaaatttgcaaatttcattttcttcga |
539 |
Q |
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| T |
4018847 |
acagaaaaatataaaattgaaattaaatttgcaaatttcatttttttcga |
4018798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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