View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19426_high_3 (Length: 459)
Name: NF19426_high_3
Description: NF19426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19426_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 1193084 - 1192789
Alignment:
| Q |
12 |
atgaagaagcataaaagtgacgtggttctatacttagtgttggtcaaattacagttacaatatttctttcatgttggtttttggacacaatatttcttca |
111 |
Q |
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| T |
1193084 |
atgaagaatcataaaagtgacgtggttctatacttagtgttggtcaaattacagttacaatatttctttcatgttggttcttggacacaatatttcttca |
1192985 |
T |
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| Q |
112 |
tgctaatgtagtcgaaatttatgagaattgagagtaaatgagtgttattccaatttaaatgtttaaatttgttctataaaacaagaatcatggaattttt |
211 |
Q |
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| T |
1192984 |
tgctaatgtagtcgaaatttatgagaattgagagtaaatgagtgttattccaatttaaatgtttaaatttgttctataaaacaagaatcatggaattttt |
1192885 |
T |
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| Q |
212 |
agagagacactgcactatatcct--tgaggttgattaataatctctcgagggaattgtcaaacctaaaggatatgatttacgaatccttcgtttgg |
305 |
Q |
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| T |
1192884 |
agacagacaccgcactatatcgtactatatctgattaataatctctcgagggaattgttaaacctaaaaaatacgatttaagaatacttcgtttgg |
1192789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 1192649 - 1192588
Alignment:
| Q |
373 |
acatttttcaaaggataataacatccaacaaattggtggtgatatgtgaatcttcctcgaaaagt |
437 |
Q |
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| T |
1192649 |
acatttttcaaaggataataacatccaacaaatt---ggtgatatgtgaatcttcatcaaaaagt |
1192588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 344
Target Start/End: Complemental strand, 1192612 - 1192573
Alignment:
| Q |
305 |
gatatgtgaatcttcgtcgaaaagtgacattctaagcaaa |
344 |
Q |
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| T |
1192612 |
gatatgtgaatcttcatcaaaaagtgacattctaagcaaa |
1192573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 45642162 - 45642202
Alignment:
| Q |
44 |
cttagtgttggtcaaattacagttacaatatttctttcatg |
84 |
Q |
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| T |
45642162 |
cttagtgttggtcaaatttcagtcacaatatttccttcatg |
45642202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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