View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19426_high_4 (Length: 410)
Name: NF19426_high_4
Description: NF19426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19426_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 375
Target Start/End: Complemental strand, 4653279 - 4652916
Alignment:
| Q |
17 |
cacatgtggttaaaaattattattacttcattagnnnnnnnnnnnnaaaccttcctgcttacaatttatttatgtaggttgagaatcacaaatttggttg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4653279 |
cacatgtggttaaaaattattattacttcattagttttttc-----aaaccttcctgctttcaatttatttatgtaggttgagaatcataaatttggttg |
4653185 |
T |
|
| Q |
117 |
atttgaacaatcttccaaacaatgaaccaagtggtaattcagaaagtggagtagttgagttgagtagcaatgaacaagaagtaattactattgaaaacta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4653184 |
atttgaacaatcttccaaacaatgaaccatgtggtaattcagaaagtggagtagttgagttgagtagcaatgaacaagaagcaattactattgaaaacta |
4653085 |
T |
|
| Q |
217 |
tttcgaaccttttattggacagtgttttctaagtgaggaagaagctttcaaattttatgagaattatgccaaaatgag----------attaaaaaaggt |
306 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
4653084 |
tttcgaaccttttattggacaatattttctaagtgaggaagaagctttcaaattttatgagaattatgccaaaatgagtgggttctcaattagaaaaggt |
4652985 |
T |
|
| Q |
307 |
aggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccatggaggattttttgat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
4652984 |
aggtttgttaataaaaatgggataatgcataggagagatttgttttgtcaccgtggaggattttctgat |
4652916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 63 - 272
Target Start/End: Complemental strand, 8925568 - 8925359
Alignment:
| Q |
63 |
aaaccttcctgcttacaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccaagtggtaattcagaaag |
162 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8925568 |
aaaccttcctgctttcaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaag |
8925469 |
T |
|
| Q |
163 |
tggagtagttgagttgagtagcaatgaacaagaagtaattactattgaaaactatttcgaaccttttattggacagtgttttctaagtgaggaagaagct |
262 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
8925468 |
tgaagtagttgagttgagtagcaatgaacaagaagcaattactattgaaaacgattttgaaccttttatagggcggtgttttctaagtgaggaagaagct |
8925369 |
T |
|
| Q |
263 |
ttcaaatttt |
272 |
Q |
| |
|
|||||||||| |
|
|
| T |
8925368 |
ttcaaatttt |
8925359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 63 - 272
Target Start/End: Complemental strand, 8935825 - 8935616
Alignment:
| Q |
63 |
aaaccttcctgcttacaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccaagtggtaattcagaaag |
162 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8935825 |
aaaccttcctgctttcaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaag |
8935726 |
T |
|
| Q |
163 |
tggagtagttgagttgagtagcaatgaacaagaagtaattactattgaaaactatttcgaaccttttattggacagtgttttctaagtgaggaagaagct |
262 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
8935725 |
tgaagtagttgagttgagtagcaatgaacaagaagcaattactattgaaaacgattttgaaccttttatagggcggtgttttctaagtgaggaagaagct |
8935626 |
T |
|
| Q |
263 |
ttcaaatttt |
272 |
Q |
| |
|
|||||||||| |
|
|
| T |
8935625 |
ttcaaatttt |
8935616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 63 - 369
Target Start/End: Complemental strand, 16150646 - 16150330
Alignment:
| Q |
63 |
aaaccttcctgcttacaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccaagtggtaattcagaaag |
162 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16150646 |
aaaccttcctgctttcaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaag |
16150547 |
T |
|
| Q |
163 |
tggagtagttgagttgagtagcaatgaacaagaagtaattactattgaaaactatttcgaaccttttattggacagtgttttctaagtgaggaagaagct |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
16150546 |
tggagtagttgagttgagtagcaatgaacaagaagcaattactattgaaaacgattttgaaccttttatagggcagtgttttctaagtgaggaagaagct |
16150447 |
T |
|
| Q |
263 |
ttcaaattttatgagaattatgccaaaatgag----------attaaaaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgtttt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16150446 |
ttcaaattttatgagaattatgccaaaaggagtgggttctcaattagaaaaggtaggtttgttaataaaaatgggataatgcacaggagagatttgtttt |
16150347 |
T |
|
| Q |
353 |
gtcaccatggaggattt |
369 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
16150346 |
gtcaccgcggaggattt |
16150330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 22141655 - 22141602
Alignment:
| Q |
221 |
gaaccttttattggacagtgttttctaagtgaggaagaagctttcaaattttat |
274 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| ||||||||| |||||||||| |
|
|
| T |
22141655 |
gaaccttttattggtcagtgttttctaaatgagaaagaagcttccaaattttat |
22141602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 3669771 - 3669718
Alignment:
| Q |
221 |
gaaccttttattggacagtgttttctaagtgaggaagaagctttcaaattttat |
274 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| ||||||||| || ||||||| |
|
|
| T |
3669771 |
gaaccttttattggtcagtgttttctaaatgagaaagaagcttccagattttat |
3669718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 63 - 369
Target Start/End: Original strand, 23301665 - 23301981
Alignment:
| Q |
63 |
aaaccttcctgcttacaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccaagtggtaattcagaaag |
162 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23301665 |
aaaccttcctgctttcaatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccatgtggtaattcagaaag |
23301764 |
T |
|
| Q |
163 |
tggagtagttgagttgagtagcaatgaacaagaagtaattactattgaaaactatttcgaaccttttattggacagtgttttctaagtgaggaagaagct |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| || || |||||||||||||||||||||||| |
|
|
| T |
23301765 |
tggagtagttgagttgagtagcaatgaacaagaagcaattactattgaaaacgattttgaaccttttatagggcaatgttttctaagtgaggaagaagct |
23301864 |
T |
|
| Q |
263 |
ttcaaattttatgagaattatgccaaaatgag----------attaaaaaaggtaggtttgttaataaaaatgggataatgcataggagagatttgtttt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23301865 |
ttcaaattttatgagaattatgccaaaaggagtgggttctcaattaaaaaaggtaggtttgttaataaaaatgggataatgcaaaggagagatttgtttt |
23301964 |
T |
|
| Q |
353 |
gtcaccatggaggattt |
369 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
23301965 |
gtcaccgaggaggattt |
23301981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 263
Target Start/End: Original strand, 26926066 - 26926252
Alignment:
| Q |
79 |
aatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccaagtggtaattcagaaagtggagtagttgagttg |
178 |
Q |
| |
|
||||||||| |||||||| || ||||| |||| |||||||||||||| ||||||| ||| ||||| ||| ||||||||||| || |||| |||| ||| |
|
|
| T |
26926066 |
aatttatttgtgtaggttaggagtcacagatttaattgatttgaacaatgttccaaataataaaccatgtgataattcagaaaatgaagtaattgatttg |
26926165 |
T |
|
| Q |
179 |
agtagcaatgaacaagaagtaattac--tattgaaaactatttcgaaccttttattggacagtgttttctaagtgaggaagaagctt |
263 |
Q |
| |
|
|| | | | || || ||| |||||| ||| ||||| | ||| |||||||||||||| || |||||| |||||||||||||||||| |
|
|
| T |
26926166 |
agcaacgacgagcaggaaacaattactatatcgaaaattgttttgaaccttttattgggcaatgttttttaagtgaggaagaagctt |
26926252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 7162357 - 7162308
Alignment:
| Q |
225 |
cttttattggacagtgttttctaagtgaggaagaagctttcaaattttat |
274 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||| ||| |||||||||| |
|
|
| T |
7162357 |
cttttattggtcagtgttttctaaatgagaaagaaacttccaaattttat |
7162308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 1000677 - 1000601
Alignment:
| Q |
79 |
aatttatttatgtaggttgagaatcacaaatttggttgatttgaacaatcttccaaacaatgaaccaagtggtaatt |
155 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||| ||||| ||| ||||| |
|
|
| T |
1000677 |
aatttatttgtgtaggttgagagtcacaaatttaattgatttgaacaatcttccaaataataaaccatgtgataatt |
1000601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University