View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19426_high_7 (Length: 275)
Name: NF19426_high_7
Description: NF19426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19426_high_7 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 22619602 - 22619864
Alignment:
| Q |
13 |
agcataggaggggatgaaaccaaatgaaaatcaataacatcatgaacataaacagagtagtatccaaattttttcccaatgcgtagtttctccaagtgtc |
112 |
Q |
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| T |
22619602 |
agcataggaggggatgaaaccaaatgaaaatcaataacatcatgaacataaacagagtagtatccaaattttttcccaatgcgtagtttctccaagtgtc |
22619701 |
T |
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| Q |
113 |
gcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactgcctcaactttcccaactccttaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22619702 |
gcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactgcctcaactttcccaactccttaat |
22619801 |
T |
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| Q |
213 |
taactctattccatcctcataattgctatctatttccacctcacttagcgtttgtagcgattc |
275 |
Q |
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| T |
22619802 |
taactctattccatcctcataattgctatctatttccacctcacttagcgtttgtagcgattc |
22619864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 22646972 - 22647109
Alignment:
| Q |
95 |
gtagtttctccaagtgtcgcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactgcctcaa |
194 |
Q |
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|||||||||||||||| |||| ||| ||||||| ||||||||| ||||| ||||| ||||| || | | ||||||||||||||||||||| | ||| |
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| T |
22646972 |
gtagtttctccaagtgccgcaactccttcaataaggaagataacgcgctcccatgctctctctgaatattatccaaacccaatttccttaacttcttcag |
22647071 |
T |
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| Q |
195 |
ctttcccaactccttaattaactctattccatcctcat |
232 |
Q |
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| T |
22647072 |
attttcgagctctctcaataactctattccatcctcat |
22647109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 22614080 - 22614183
Alignment:
| Q |
95 |
gtagtttctccaagtgtcgcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactgcctcaa |
194 |
Q |
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||||||||||||||||| ||| |||||| | || ||||||| | | |||||||| |||||||||| || |||||| || |||| ||||||||| |||| |
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| T |
22614080 |
gtagtttctccaagtgttgcatctcattgactaaagaagatagaacacttccatgctctcttctaagacgaaccaagcctaattctcttaactgcttcaa |
22614179 |
T |
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| Q |
195 |
cttt |
198 |
Q |
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|||| |
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| T |
22614180 |
cttt |
22614183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 34990925 - 34990789
Alignment:
| Q |
89 |
caatgcgtagtttctccaagtgtcgcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactg |
188 |
Q |
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||||||||| ||||||||||||||||| |||||||| | |||||||||||||||| |||| | || ||| || ||| | ||| ||||||||| | |
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| T |
34990925 |
caatgcgtaatttctccaagtgtcgcatctcattcagtgaggaagataaagcgcttgaatgtcttgccctcacatcattcaagctcaacttccttaaccg |
34990826 |
T |
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| Q |
189 |
cctcaactttcccaactccttaattaactctattcca |
225 |
Q |
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||| | |||||||||||||||||| |||||||||||| |
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| T |
34990825 |
ccttagctttcccaactccttaatcaactctattcca |
34990789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 2304277 - 2304412
Alignment:
| Q |
90 |
aatgcgtagtttctccaagtgtcgcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactgc |
189 |
Q |
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||||| || ||||||| ||||||||| ||||||||| ||||||||||||| || ||||||| || ||| ||| ||| | || |||||||||||| |
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| T |
2304277 |
aatgcataatttctccgagtgtcgcatctcattcaacgaggaagataaagcgattgaatgttctagcctcacatcaaacaagctaaacttccttaactgc |
2304376 |
T |
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| Q |
190 |
ctcaactttcccaactccttaattaactctattcca |
225 |
Q |
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| T |
2304377 |
cttagctttcccaactctttaattaactctattcca |
2304412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 34976960 - 34976909
Alignment:
| Q |
178 |
ttccttaactgcctcaactttcccaactccttaattaactctattccatcct |
229 |
Q |
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||||||||||| || |||||||||||||| |||||||||||||||||||||| |
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| T |
34976960 |
ttccttaactgtctgaactttcccaactctttaattaactctattccatcct |
34976909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 34984096 - 34983960
Alignment:
| Q |
89 |
caatgcgtagtttctccaagtgtcgcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactg |
188 |
Q |
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|||||| || ||| || |||||||||| |||||||||| ||||||||||||||| ||||||| || || || ||| ||| ||||||||||| |
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| T |
34984096 |
caatgcataatttttctaagtgtcgcatctcattcaatgaggaagataaagcgctaaaatgttctgccctcgcataaaacaaggtcaacttccttaactg |
34983997 |
T |
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| Q |
189 |
cctcaactttcccaactccttaattaactctattcca |
225 |
Q |
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|| | |||||||||||| |||||||||||||||||| |
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| T |
34983996 |
tcttagctttcccaactctttaattaactctattcca |
34983960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 40581590 - 40581470
Alignment:
| Q |
105 |
caagtgtcgcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactgcctcaactttcccaac |
204 |
Q |
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||||||||||| |||||||||| ||||||||||||||| ||||||| || || || ||| ||| |||||||||||||| | ||||| |||| |
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| T |
40581590 |
caagtgtcgcatctcattcaatgaggaagataaagcgctaaaatgttctgccctcgcataaaacaagttcaacttccttaactgccttagctttctcaac |
40581491 |
T |
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| Q |
205 |
tccttaattaactctattcca |
225 |
Q |
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|| |||||||||||||||||| |
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| T |
40581490 |
tctttaattaactctattcca |
40581470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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