View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19426_low_12 (Length: 224)
Name: NF19426_low_12
Description: NF19426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19426_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 38181372 - 38181586
Alignment:
| Q |
1 |
tgcttgatgaaaatggaaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttgattgacttcagtaatttggagga |
100 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38181372 |
tgcttgatgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttgattgacttcagtaatttggagga |
38181471 |
T |
|
| Q |
101 |
cgatgttgaaaccggcggtcgtttatttgacaatgatg----ataacagtaacttgcatgacacgatataaaaagcttatagtgtttgcaacacaatttt |
196 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38181472 |
cgatgttgaagccggcagtcgtttatttgacaatgatgatatataacagtaacttgcatgacacgatataaaaagcttatagtgtttgcaacacaatttt |
38181571 |
T |
|
| Q |
197 |
tctgtaatattcttc |
211 |
Q |
| |
|
|||||||| |||||| |
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| T |
38181572 |
tctgtaattttcttc |
38181586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 38189759 - 38189545
Alignment:
| Q |
1 |
tgcttgatgaaaatggaaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttgattgacttcagtaatttggagga |
100 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38189759 |
tgcttgatgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttgattgacttcagtaatttggagga |
38189660 |
T |
|
| Q |
101 |
cgatgttgaaaccggcggtcgtttatttgacaatgatg----ataacagtaacttgcatgacacgatataaaaagcttatagtgtttgcaacacaatttt |
196 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38189659 |
cgatgttgaagccggcagtcgtttatttgacaatgatgatatataacagtaacttgcatgacacgatataaaaagcttatagtgtttgcaacacaatttt |
38189560 |
T |
|
| Q |
197 |
tctgtaatattcttc |
211 |
Q |
| |
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|||||||| |||||| |
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| T |
38189559 |
tctgtaattttcttc |
38189545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 38216984 - 38216770
Alignment:
| Q |
1 |
tgcttgatgaaaatggaaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttgattgacttcagtaatttggagga |
100 |
Q |
| |
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||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38216984 |
tgcttgatgaaaaagggaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttgattgacttcagtaatttggagga |
38216885 |
T |
|
| Q |
101 |
cgatgttgaaaccggcggtcgtttatttgacaatgatg----ataacagtaacttgcatgacacgatataaaaagcttatagtgtttgcaacacaatttt |
196 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38216884 |
cgatgttgaagccggcagtcgtttatttgacaatgatgatatataacagtaacttgcatgacacgatataaaaagcttatagtgtttgcaacacaatttt |
38216785 |
T |
|
| Q |
197 |
tctgtaatattcttc |
211 |
Q |
| |
|
|||||||| |||||| |
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| T |
38216784 |
tctgtaattttcttc |
38216770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 38208596 - 38208812
Alignment:
| Q |
1 |
tgcttgatgaaaatggaaagaagccaatttcattggaggac-gat-gttgaagcaaaccttgatgatttcatggatttgattgacttcagtaatttggag |
98 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38208596 |
tgcttgatgaaaaagggaagaagccaatttcattggaggaccgatcgttgaagcaaaccttgatgatttcatggatttgattgacttcagtaatttggag |
38208695 |
T |
|
| Q |
99 |
gacgatgttgaaaccggcggtcgtttatttgacaatgatg----ataacagtaacttgcatgacacgatataaaaagcttatagtgtttgcaacacaatt |
194 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38208696 |
gacgatgttgaagccggcagtcgtttatttgacaatgatgatatataacagtaacttgcatgacacgatataaaaagcttatagtgtttgcaacacaatt |
38208795 |
T |
|
| Q |
195 |
tttctgtaatattcttc |
211 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
38208796 |
tttctgtaattttcttc |
38208812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 38456733 - 38456949
Alignment:
| Q |
1 |
tgcttgatgaaaatggaaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggatttgattgacttcagtaatttggagga |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38456733 |
tgcttgatgaaaatgggaagaagccaatttcattggaggacgattttgaagcaaaccttgatgatttcatggatttgattgacttcagtaatttggagga |
38456832 |
T |
|
| Q |
101 |
cgatgttgaaaccggcggtcgtttatttgacaatgatg------ataacagtaacttgcatgacacgatataaaaagcttatagtgtttgcaacacaatt |
194 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||| | |
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| T |
38456833 |
cgatgttgaagccggcagtcgtttatttgacaatgatgatatatataacagtaacttgcatgacaagatataaaaagcttatattgtttgcaacacaact |
38456932 |
T |
|
| Q |
195 |
tttctgtaatattcttc |
211 |
Q |
| |
|
|||||||| | |||||| |
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|
| T |
38456933 |
tttctgtatttttcttc |
38456949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 78 - 211
Target Start/End: Complemental strand, 38172025 - 38171892
Alignment:
| Q |
78 |
attgacttcagtaatttggaggacgatgttgaaaccggcggtcgtttatttgacaatgatgataacagtaacttgcatgacacgatataaaaagcttata |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38172025 |
attgacttcagtaatttggaggacgatgttgaaaccggcggtcgtttatttgacaatgatgataacagtaacttgcatgacacgatataaaaagcttata |
38171926 |
T |
|
| Q |
178 |
gtgtttgcaacacaatttttctgtaatattcttc |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
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| T |
38171925 |
gtgtttgcaacacaatttttctgtaattttcttc |
38171892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 202
Target Start/End: Complemental strand, 26032771 - 26032561
Alignment:
| Q |
4 |
ttgatgaaaatggaaagaagccaatttcattggaggacgatgttgaagcaaacct---tgatgatttcatggat---------ttgattgacttcagtaa |
91 |
Q |
| |
|
|||||||||| || |||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||| | |||||||||||||| |
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|
| T |
26032771 |
ttgatgaaaaagggaagaagcctatttcgttggaggacgatgttgaagcaaacctccttgatgacttcatggatccatttctatgtattgacttcagtaa |
26032672 |
T |
|
| Q |
92 |
tttggaggacgatgttgaaaccggcggtcgtttatttgacaatgatgataacagtaacttgcatgacacgatataaaaagcttatagtgtttgcaacaca |
191 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26032671 |
tttggaggacgatgttgaagccggcggtcgtttatttgacaatgatgataaccgtaacttgcatgacacgatataaaaagcttatagtgtttgcaacaca |
26032572 |
T |
|
| Q |
192 |
atttttctgta |
202 |
Q |
| |
|
|| |||||||| |
|
|
| T |
26032571 |
atgtttctgta |
26032561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 53351013 - 53350943
Alignment:
| Q |
4 |
ttgatgaaaatggaaagaagccaatttcattggaggacgatgttgaagcaaaccttgatgatttcatggat |
74 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| || |||||| |
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|
| T |
53351013 |
ttgatgaaaaaggaaagaagccaatttctttgaaggacgatgttgaagcaaaccttgatgacttgatggat |
53350943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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