View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19426_low_15 (Length: 210)
Name: NF19426_low_15
Description: NF19426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19426_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7803927 - 7803852
Alignment:
| Q |
1 |
catgggaaatagagtatgaatcagagttgatggctgttctggttttctataaggaagtcaaaaggcccttattaat |
76 |
Q |
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| T |
7803927 |
catgggaaatagagtatgaataagagttgatggttgttctggttttctagatggaagtcaaaaggcccttactaat |
7803852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 7833322 - 7833250
Alignment:
| Q |
1 |
catgggaaatagagtatgaatcagagttgatggctgttctggttttctataaggaagtcaaaaggcccttattaat |
76 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||||| |
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| T |
7833322 |
catgggaaatagagtatgaatcagagttgatg---gttctggttttctagatggaagtcaaaaggccattattaat |
7833250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 7783859 - 7783802
Alignment:
| Q |
1 |
catgggaaatagagtatgaatcagagttgatggctgttctggttttctataaggaagt |
58 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||| | |||||| |
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| T |
7783859 |
catgggaaatagagtatgaataagagttgatggttgttctggttttctagatggaagt |
7783802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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