View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19426_low_16 (Length: 206)

Name: NF19426_low_16
Description: NF19426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19426_low_16
NF19426_low_16
[»] chr3 (27 HSPs)
chr3 (23-190)||(18165773-18165940)
chr3 (23-190)||(19464970-19465137)
chr3 (23-195)||(19414796-19414968)
chr3 (23-195)||(19437570-19437742)
chr3 (23-195)||(18147442-18147614)
chr3 (24-195)||(18873095-18873266)
chr3 (23-190)||(25463667-25463834)
chr3 (23-194)||(18109052-18109223)
chr3 (23-195)||(19376234-19376406)
chr3 (23-194)||(17950445-17950616)
chr3 (23-127)||(17942634-17942738)
chr3 (23-195)||(19334621-19334793)
chr3 (23-120)||(19400413-19400510)
chr3 (31-122)||(16677895-16677986)
chr3 (21-191)||(18103962-18104132)
chr3 (23-120)||(14895606-14895703)
chr3 (23-127)||(19381573-19381677)
chr3 (23-195)||(19393761-19393933)
chr3 (29-126)||(19354396-19354493)
chr3 (23-127)||(18116645-18116749)
chr3 (25-185)||(19425309-19425469)
chr3 (23-126)||(18016703-18016806)
chr3 (23-126)||(19352073-19352176)
chr3 (23-92)||(19439359-19439428)
chr3 (23-194)||(17726753-17726924)
chr3 (23-194)||(19027982-19028153)
chr3 (23-127)||(19461867-19461973)
[»] chr4 (2 HSPs)
chr4 (23-195)||(15536145-15536317)
chr4 (23-195)||(2709804-2709976)
[»] scaffold0648 (1 HSPs)
scaffold0648 (23-190)||(3320-3487)
[»] scaffold0640 (1 HSPs)
scaffold0640 (23-190)||(6020-6187)
[»] scaffold0274 (2 HSPs)
scaffold0274 (23-190)||(2789-2956)
scaffold0274 (31-127)||(21304-21400)
[»] chr8 (1 HSPs)
chr8 (31-188)||(8460164-8460321)
[»] chr6 (1 HSPs)
chr6 (47-154)||(13666190-13666297)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 18165940 - 18165773
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||  ||||||||||||||||||||||||||||||||||||||    
T  18165940 gaatagtcccttcaaattggttagctctcaatatgaccacttctaacttttgtgaaatcaaaattggtatggttccagaaaattcattttctcccaagtt 18165841  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 190  Q
    |||||||  ||||||||||||||  |||||||||||||||||||||||  ||||||||||||||||||    
T  18165840 catgatttccaattggttcaaatcggagaagtgcaatgaaacttcaccaaatagcctattactccaca 18165773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 19465137 - 19464970
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||||| ||||||||    
T  19465137 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagtcttgtgaaatcaagataggtatggttccagaaaattcattttcgcccaagtt 19465038  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 190  Q
    |||| ||  ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  19465037 catgttttccaattggttcaaattagagaagtgcaacgaaacttcaccagatagcctattactccaca 19464970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 19414968 - 19414796
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  19414968 gaatagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtgacatcatgattggtatggttccataaaattcattttctcccaaatt 19414869  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 195  Q
    ||||| ||| ||||| ||| ||  |||| ||| ||| | ||||||||| ||||||||||||||||||||||||    
T  19414868 catgactcttaattgcttccaaccagagcagtacaaaggaacttcaccagatagcctattactccacaggttc 19414796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 19437742 - 19437570
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19437742 gaatagtcccttcaaatttattagctctcaatatgaccacttttaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagtt 19437643  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 195  Q
    |||| ||  |||||| |||   |||||||||| ||||| || ||| ||||| | |||||||||||||||||||    
T  19437642 catggtttccaattgtttccggttagagaagtacaatggaagttcccctgacaacctattactccacaggttc 19437570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 18147614 - 18147442
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18147614 gaatagtcccttcaaatttattagctctcaatatgaccactagtaagttttgtgacatcatgattggtatggttccagaaaattcattttctcctaagtt 18147515  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 195  Q
    |||||||  |||||| ||| | | |||||||| ||||| || ||| || || | |||||||||||||||||||    
T  18147514 catgatttccaattgtttccagtaagagaagtacaatggaagttccccagacaacctattactccacaggttc 18147442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 24 - 195
Target Start/End: Original strand, 18873095 - 18873266
Alignment:
Q  24 aatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttc 123  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||    
T  18873095 aatattcccttcaaattggttagctctcaatatgactacttctaggttttgtgacatcatgaatggtatgtttccagaaaattcattttctcccaaattc 18873194  T
Q  124 atgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 195  Q
    | |||   ||| || ||| | | ||||| |||   |  ||||||||| ||||||||||||||||||||||||    
T  18873195 aagatctgcaactgtttccattcagagaggtgatcttgaacttcaccagatagcctattactccacaggttc 18873266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 25463834 - 25463667
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||| | ||| |||  | ||||||||||||||||||||||||||||||||||||||    
T  25463834 gaatattcccttcaaattggtttgctctcaatatgaccacttctaagtatagtggcatgttcattggtatggttccagaaaattcattttctcccaagtt 25463735  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 190  Q
    |||||||  ||||||  || ||| ||||| ||| | |  ||||||||| |||||||||||| ||||||    
T  25463734 catgatttccaattgtctccaatcagagaggtgtactagaacttcaccagatagcctattattccaca 25463667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 18109223 - 18109052
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |   |||||||||| ||| |||||||||||||||||||||||||    
T  18109223 gaatagttccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagtt 18109124  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 194  Q
    |||||||  ||||||  || ||| ||||| |||   |  ||||||||| ||||||||||||||||| |||||    
T  18109123 catgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 18109052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 19376406 - 19376234
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||||||||||||||||  |||||||||||||||||||  | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  19376406 gaatagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtgacatcttgattggtatggttccagaaaattcattttctcccaaatt 19376307  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 195  Q
    || || |  |||||| ||  ||  ||||| |||   |  ||||||||| ||||||||||||||||| ||||||    
T  19376306 caagaattgcaattgatttgaagcagagaggtgagctagaacttcaccagatagcctattactccataggttc 19376234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 23 - 194
Target Start/End: Complemental strand, 17950616 - 17950445
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| |   |||||||||| ||| |||||||||||||||||||||||||    
T  17950616 gaatagttccttctaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagtt 17950517  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 194  Q
    |||||||  ||||||  || ||| ||||| |||   |  ||||||||| ||||||||||||||||| |||||    
T  17950516 catgatttccaattgtctccaatcagagaggtgtcctagaacttcaccagatagcctattactccaaaggtt 17950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 17942738 - 17942634
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |   ||||||||||||||||| |||| |||||||||||||| ||    
T  17942738 gaatagtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtgataagctgattggtatggttccaaaaaactcattttctcccaaatt 17942639  T
Q  123 catga 127  Q
    |||||    
T  17942638 catga 17942634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 19334793 - 19334621
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||||||||||||||||| || ||||||||||||| || || ||||||||||||||||    |||||||| ||||||||||||||||||||||||| ||    
T  19334793 gaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggtatgcttccagaaaattcattttctcccaaatt 19334694  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 195  Q
     |||| ||||||||| ||| ||| |||||  |||  |  ||||||||| || |||||||||||||| ||||||    
T  19334693 tatgactctcaattgtttccaatcagagagatgctcttgaacttcaccagacagcctattactccataggttc 19334621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 19400510 - 19400413
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 120  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |   |||||||||||||||| |||||||||||||||||||||    
T  19400510 gaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatggttcccgaaaattcattttctcccaag 19400413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 16677986 - 16677895
Alignment:
Q  31 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    |||||||| ||||||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  16677986 ccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattggtatggttccagaaaattcattttctcctaagtt 16677895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 18104132 - 18103962
Alignment:
Q  21 cagaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 120  Q
    |||||| |||||||||||||| || ||||||||||||| |||||||||||||||||||||    | |||||| ||||||||||||||||||||||| | |    
T  18104132 cagaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaaattcattttctcctacg 18104033  T
Q  121 ttcatgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacag 191  Q
    |||||| |   |||||| ||||| |||||||||| ||||| || ||  || || | |||||||||||||||    
T  18104032 ttcatggtctgcaattgtttcaagttagagaagtacaatggaagtttccccgacaacctattactccacag 18103962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 14895606 - 14895703
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 120  Q
    ||||| |||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||    
T  14895606 gaatattcccttcaaattggttagatctcaatataaccacttgtaagtattgtgacatcatggttggtatagttccataaaattcattttctcccaag 14895703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 19381677 - 19381573
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||| |   | ||||||||||||||||||||||||||||||||||| ||    
T  19381677 gaatattcccttcaaattggttagctctcaatatgacaatttctaagttttctgataagttcattggtatggttccagaaaattcattttctcccaaatt 19381578  T
Q  123 catga 127  Q
    |||||    
T  19381577 catga 19381573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 19393933 - 19393761
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||||| ||||||||||| || |||||||||||||||||| |||||||||||| ||||   | ||||||| |||||||||||||||||| |||||| ||    
T  19393933 gaatagtaccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactggtatgtttccagaaaattcattttttcccaaatt 19393834  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 195  Q
    ||||||   ||||||  || ||| ||||| ||  |||| ||||||||| || ||| |||||||||| ||||||    
T  19393833 catgatctgcaattgtctccaatcagagaggtttaatggaacttcaccagacagcttattactccataggttc 19393761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 19354493 - 19354396
Alignment:
Q  29 tcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatg 126  Q
    |||||||||||||||| ||||||||||||||||||  ||||  |||||||||  ||||||||||||||||||||||||| ||  ||||||||||||||    
T  19354493 tcccttcaaattggttggctctcaatatgaccactgttaaggattgtgacattttgattggtatggttccagaaaattcgttagctcccaagttcatg 19354396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 18116749 - 18116645
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||| ||||||||||||||||| |||||| |||||| |||||||| | |||||  ||  | | ||||||||||||||||||||||||||||||||||||    
T  18116749 gaatactcccttcaaattggttacctctcagtatgactacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaagtt 18116650  T
Q  123 catga 127  Q
    |||||    
T  18116649 catga 18116645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 19425469 - 19425309
Alignment:
Q  25 atagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttca 124  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |   | ||||||||| |||| ||||||| ||||||||||||  |||    
T  19425469 atagtcccttcaaattggttagctctcaatatgacgacttctaatttttgtgataagttcattggtatgattcctgaaaatttattttctcccaaaatca 19425370  T
Q  125 tgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattact 185  Q
    ||||   |||||| ||| ||| ||||| ||||  |  ||||||||  |||||| |||||||    
T  19425369 tgatctgcaattgtttccaatcagagaggtgctgtataacttcacaggatagcttattact 19425309  T

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Target: chr3; HSP #22
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 18016806 - 18016703
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||| ||||||||||||  || ||||||||||||||||||  ||||||||||||||||   | ||||||| |||||||||||||||||| |||||||||    
T  18016806 gaataatcccttcaaatttattggctctcaatatgaccactcttaagttttgtgacatccctactggtatgtttccagaaaattcattttttcccaagtt 18016707  T
Q  123 catg 126  Q
    ||||    
T  18016706 catg 18016703  T

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Target: chr3; HSP #23
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 19352176 - 19352073
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||| ||||||||||||  || ||||| |||||||||||| |||||||||||||||||   |  |||||| ||||||||||||||||||||||||||||    
T  19352176 gaataatcccttcaaatttattggctctaaatatgaccactactaagttttgtgacatccctaccggtatgtttccagaaaattcattttctcccaagtt 19352077  T
Q  123 catg 126  Q
    ||||    
T  19352076 catg 19352073  T

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Target: chr3; HSP #24
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 19439428 - 19439359
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtat 92  Q
    ||||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||    
T  19439428 gaatagttccttcaaattggttatctctcaatattaccactcctaagttttgtgacatcatgattggtat 19439359  T

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Target: chr3; HSP #25
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 17726753 - 17726924
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    |||||| ||||||||| || ||| ||| ||||||||||| |||||||| ||||||||||   | ||||||| |||||||||||||||||||||||||  |    
T  17726753 gaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaaaat 17726852  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 194  Q
     |||  |  |||||| ||||||| ||||| |||   |  ||||||||| || |||||||||||||| |||||    
T  17726853 aatgtgttgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggtt 17726924  T

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Target: chr3; HSP #26
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 23 - 194
Target Start/End: Original strand, 19027982 - 19028153
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    |||||| ||||||||| || ||| ||| ||||||||||| |||||||| ||||||||||   | ||||||| |||||||||||||||||||||||||  |    
T  19027982 gaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatgtttccagaaaattcattttctcccaaaat 19028081  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggtt 194  Q
     |||  |  |||||| ||||||| ||||| |||   |  ||||||||| || |||||||||||||| |||||    
T  19028082 aatgtgttgcaattgtttcaaatcagagaggtgtcctagaacttcaccagacagcctattactccataggtt 19028153  T

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Target: chr3; HSP #27
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 19461973 - 19461867
Alignment:
Q  23 gaatagtcccttcaaattggttagctctca--atatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaag 120  Q
    ||||| ||||||||||||||||| ||||||  ||||||  |||||||| | |||||  ||  | | ||||||||||||||||||||||||||||||||||    
T  19461973 gaatactcccttcaaattggttacctctcagtatatgaatacttctaaatattgtggtatgttcaatggtatggttccagaaaattcattttctcccaag 19461874  T
Q  121 ttcatga 127  Q
    |||||||    
T  19461873 ttcatga 19461867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 23 - 195
Target Start/End: Complemental strand, 15536317 - 15536145
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||| ||||||||||||  || | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15536317 gaataatcccttcaaatttattggttctcaatatgaccactactaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 15536218  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 195  Q
    |||| ||  |||||| ||| ||  ||||| ||||| || ||||||||| || |  |||||| |||||||||||    
T  15536217 catggtttgcaattgtttcgaagcagagaggtgcattggaacttcaccagacaaactattattccacaggttc 15536145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 2709804 - 2709976
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    |||||||||||| |||||||||||||||||||||||  ||||  || | ||| |||||| |||||||||| ||||||||||||||||||||||| | |||    
T  2709804 gaatagtccctttaaattggttagctctcaatatgagaactttcaaatcttgcgacatcttgattggtatagttccagaaaattcattttctcctaggtt 2709903  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccacaggttc 195  Q
    ||||  |  ||||   | | ||||||||| ||||| || ||||||||| |||||  |||||||||||| ||||    
T  2709904 catggcttgcaatccataccaattagagaggtgcattggaacttcaccagatagtttattactccacaagttc 2709976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 3320 - 3487
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||| | ||||| |||  |||||||||||||||||||||| ||||||||| |||| ||    
T  3320 gaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaatt 3419  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 190  Q
    ||||| |  |||||| ||| ||| ||||| |||   |  ||||||||| || ||| ||||||||||||    
T  3420 catgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca 3487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 6187 - 6020
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||| | ||||| |||  |||||||||||||||||||||| ||||||||| |||| ||    
T  6187 gaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaatt 6088  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 190  Q
    ||||| |  |||||| ||| ||| ||||| |||   |  ||||||||| || ||| ||||||||||||    
T  6087 catgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca 6020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 23 - 190
Target Start/End: Original strand, 2789 - 2956
Alignment:
Q  23 gaatagtcccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagtt 122  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||| | ||||| |||  |||||||||||||||||||||| ||||||||| |||| ||    
T  2789 gaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttcttccaaatt 2888  T
Q  123 catgattctcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactccaca 190  Q
    ||||| |  |||||| ||| ||| ||||| |||   |  ||||||||| || ||| ||||||||||||    
T  2889 catgaattgcaattgtttccaatcagagaggtgtcctagaacttcaccagacagcttattactccaca 2956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 21400 - 21304
Alignment:
Q  31 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatga 127  Q
    ||||| |||||||||||||| ||||||||||||||||| | ||||| |||  |||||||||||||||||||||| |||||||||||||| |||||||    
T  21400 ccttcgaattggttagctcttaatatgaccacttctaaatattgtggcatgttgattggtatggttccagaaaactcattttctcccaaattcatga 21304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 31 - 188
Target Start/End: Complemental strand, 8460321 - 8460164
Alignment:
Q  31 ccttcaaattggttagctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgattc 130  Q
    |||||||||||||| ||||||||||||||||||||||| |   |||||||  | ||||| |||||||||||||||| ||||||||||||||| || |||     
T  8460321 ccttcaaattggttggctctcaatatgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctcccaagttaatcattt 8460222  T
Q  131 tcaattggttcaaattagagaagtgcaatgaaacttcacctgatagcctattactcca 188  Q
     |||||| ||||||| | ||| || ||  | |||||| || |||||||||||||||||    
T  8460221 ccaattgtttcaaatcaaagaggtccaccggaacttcgccagatagcctattactcca 8460164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 154
Target Start/End: Original strand, 13666190 - 13666297
Alignment:
Q  47 ctctcaatatgaccacttctaagttttgtgacatcatgattggtatggttccagaaaattcattttctcccaagttcatgattctcaattggttcaaatt 146  Q
    ||||||||||||||||||  |||||| |||| |||| ||||| ||||||||||  ||||||||||||||| ||||||||| ||  ||| || ||||| ||    
T  13666190 ctctcaatatgaccacttgaaagtttggtgaaatcaagattgttatggttccattaaattcattttctcctaagttcatggtttgcaactgtttcaagtt 13666289  T
Q  147 agagaagt 154  Q
    ||||||||    
T  13666290 agagaagt 13666297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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