View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19426_low_2 (Length: 536)
Name: NF19426_low_2
Description: NF19426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19426_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 221 - 523
Target Start/End: Complemental strand, 12143388 - 12143082
Alignment:
| Q |
221 |
aattattggttgcagagaaactatgaacgaagttacaatgaagaggaggagactggtggatggaaacaatcggctagggacttttgaagtgaatgaagga |
320 |
Q |
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| T |
12143388 |
aattattggttgcagagaaactacgaacggagttacaatcaagaggaggagaccggaggatggaaacaatcggctagggacttttgaagtgaatgaagga |
12143289 |
T |
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| Q |
321 |
tatttacatatctcctcccaaatcaagaattacttctatgaaagaagaccaaaaatgtatctttagggattttaatctctgtatttgctggtgtg-gatg |
419 |
Q |
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| T |
12143288 |
tatttacatatctcctcccaaatcaagaattacttctatgaaagaagaccaaaaatgtatctttagggattttaatctctgtatttgctggtgtgtgatg |
12143189 |
T |
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| Q |
420 |
atctgataaaattctgtttttccttttgacataaactatgtta---tgctgaaataatattttaattttatgcactaaaacttgttcaagataagccttg |
516 |
Q |
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| T |
12143188 |
atctgataaaattctgtttttccttttgacataaactatgttatgctgctgaaataatattttaattttatgcactaaaacttattcaagataagccttg |
12143089 |
T |
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| Q |
517 |
ttatatt |
523 |
Q |
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| T |
12143088 |
ttatatt |
12143082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 221 - 318
Target Start/End: Complemental strand, 12150371 - 12150274
Alignment:
| Q |
221 |
aattattggttgcagagaaactatgaacgaagttacaatgaagaggaggagactggtggatggaaacaatcggctagggacttttgaagtgaatgaag |
318 |
Q |
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| T |
12150371 |
aattattggttgcagagaaatgatgatcagagttacaatgaagaggaggagactggtggatggaaagaatcagctagtgacttttgaagtgaatgaag |
12150274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 12136826 - 12136798
Alignment:
| Q |
138 |
taattttgcttattatccaaacacaacaa |
166 |
Q |
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| T |
12136826 |
taattttgcttattatccaaacacaacaa |
12136798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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