View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19426_low_7 (Length: 275)

Name: NF19426_low_7
Description: NF19426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19426_low_7
NF19426_low_7
[»] chr3 (3 HSPs)
chr3 (13-275)||(22619602-22619864)
chr3 (95-232)||(22646972-22647109)
chr3 (95-198)||(22614080-22614183)
[»] chr1 (4 HSPs)
chr1 (89-225)||(34990789-34990925)
chr1 (90-225)||(2304277-2304412)
chr1 (178-229)||(34976909-34976960)
chr1 (89-225)||(34983960-34984096)
[»] chr5 (1 HSPs)
chr5 (105-225)||(40581470-40581590)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 22619602 - 22619864
Alignment:
Q  13 agcataggaggggatgaaaccaaatgaaaatcaataacatcatgaacataaacagagtagtatccaaattttttcccaatgcgtagtttctccaagtgtc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22619602 agcataggaggggatgaaaccaaatgaaaatcaataacatcatgaacataaacagagtagtatccaaattttttcccaatgcgtagtttctccaagtgtc 22619701  T
Q  113 gcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactgcctcaactttcccaactccttaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22619702 gcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactgcctcaactttcccaactccttaat 22619801  T
Q  213 taactctattccatcctcataattgctatctatttccacctcacttagcgtttgtagcgattc 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22619802 taactctattccatcctcataattgctatctatttccacctcacttagcgtttgtagcgattc 22619864  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 22646972 - 22647109
Alignment:
Q  95 gtagtttctccaagtgtcgcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactgcctcaa 194  Q
    |||||||||||||||| |||| ||| ||||||| ||||||||| ||||| ||||| |||||   || |  | ||||||||||||||||||||| | |||     
T  22646972 gtagtttctccaagtgccgcaactccttcaataaggaagataacgcgctcccatgctctctctgaatattatccaaacccaatttccttaacttcttcag 22647071  T
Q  195 ctttcccaactccttaattaactctattccatcctcat 232  Q
     ||| | | |||  | | ||||||||||||||||||||    
T  22647072 attttcgagctctctcaataactctattccatcctcat 22647109  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 22614080 - 22614183
Alignment:
Q  95 gtagtttctccaagtgtcgcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactgcctcaa 194  Q
    ||||||||||||||||| ||| |||||| | ||  ||||||| | | |||||||| |||||||||| || |||||| || ||||  ||||||||| ||||    
T  22614080 gtagtttctccaagtgttgcatctcattgactaaagaagatagaacacttccatgctctcttctaagacgaaccaagcctaattctcttaactgcttcaa 22614179  T
Q  195 cttt 198  Q
    ||||    
T  22614180 cttt 22614183  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 34990925 - 34990789
Alignment:
Q  89 caatgcgtagtttctccaagtgtcgcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactg 188  Q
    ||||||||| ||||||||||||||||| |||||||| |  ||||||||||||||||  ||||  |   || ||| ||  ||| | ||| ||||||||| |    
T  34990925 caatgcgtaatttctccaagtgtcgcatctcattcagtgaggaagataaagcgcttgaatgtcttgccctcacatcattcaagctcaacttccttaaccg 34990826  T
Q  189 cctcaactttcccaactccttaattaactctattcca 225  Q
    ||| | |||||||||||||||||| ||||||||||||    
T  34990825 ccttagctttcccaactccttaatcaactctattcca 34990789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 2304277 - 2304412
Alignment:
Q  90 aatgcgtagtttctccaagtgtcgcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactgc 189  Q
    ||||| || ||||||| ||||||||| |||||||||   ||||||||||||| ||  |||||||   || ||| ||| ||| |  || ||||||||||||    
T  2304277 aatgcataatttctccgagtgtcgcatctcattcaacgaggaagataaagcgattgaatgttctagcctcacatcaaacaagctaaacttccttaactgc 2304376  T
Q  190 ctcaactttcccaactccttaattaactctattcca 225  Q
    || | |||||||||||| ||||||||||||||||||    
T  2304377 cttagctttcccaactctttaattaactctattcca 2304412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 34976960 - 34976909
Alignment:
Q  178 ttccttaactgcctcaactttcccaactccttaattaactctattccatcct 229  Q
    ||||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  34976960 ttccttaactgtctgaactttcccaactctttaattaactctattccatcct 34976909  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 34984096 - 34983960
Alignment:
Q  89 caatgcgtagtttctccaagtgtcgcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactg 188  Q
    |||||| || ||| || |||||||||| ||||||||||  |||||||||||||||   |||||||   ||  ||  || |||   ||| |||||||||||    
T  34984096 caatgcataatttttctaagtgtcgcatctcattcaatgaggaagataaagcgctaaaatgttctgccctcgcataaaacaaggtcaacttccttaactg 34983997  T
Q  189 cctcaactttcccaactccttaattaactctattcca 225  Q
     || | |||||||||||| ||||||||||||||||||    
T  34983996 tcttagctttcccaactctttaattaactctattcca 34983960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 225
Target Start/End: Complemental strand, 40581590 - 40581470
Alignment:
Q  105 caagtgtcgcagctcattcaatacggaagataaagcgcttccatgttctcttctaacaccaaccaaacccaatttccttaactgcctcaactttcccaac 204  Q
    ||||||||||| ||||||||||  |||||||||||||||   |||||||   ||  ||  || |||   ||| |||||||||||||| | ||||| ||||    
T  40581590 caagtgtcgcatctcattcaatgaggaagataaagcgctaaaatgttctgccctcgcataaaacaagttcaacttccttaactgccttagctttctcaac 40581491  T
Q  205 tccttaattaactctattcca 225  Q
    || ||||||||||||||||||    
T  40581490 tctttaattaactctattcca 40581470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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