View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19427_high_1 (Length: 492)
Name: NF19427_high_1
Description: NF19427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19427_high_1 |
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| [»] scaffold0777 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 145 - 471
Target Start/End: Original strand, 24929767 - 24930092
Alignment:
| Q |
145 |
caccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaattcacttcagaaagct |
244 |
Q |
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| T |
24929767 |
caccgcttattctcggcgccgctagtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaatccacttcagaaagct |
24929866 |
T |
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| Q |
245 |
acgatgaaaagatgaagaaaccattaatcattgatgacgagccagaagaattcaccactggtatgttaattggtgagtcctcaagaagctcatgtggtat |
344 |
Q |
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| T |
24929867 |
atgatgaaaagatgaagaaaccattaatcattgatgacgagccagaagaattcaccactggtatgt-aattggtgagtcctcaagaagctcatgtggtat |
24929965 |
T |
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| Q |
345 |
atgctttgatttgaaaactgattttgatatgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtggattctcaactc |
444 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24929966 |
atgctttgatttgaaaactgattttgatatgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtagattctcaactc |
24930065 |
T |
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| Q |
445 |
aacaataatgtggttaaggtgacttgt |
471 |
Q |
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| T |
24930066 |
aacaataatgtggttaaggtgacttgt |
24930092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 315 - 471
Target Start/End: Complemental strand, 24976941 - 24976785
Alignment:
| Q |
315 |
tggtgagtcctcaagaagctcatgtggtatatgctttgatttgaaaactgattttgatatgttcaaaagaaagagttgcaaccatctcttttgtgttgat |
414 |
Q |
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| T |
24976941 |
tggtgaatcctcacgaagcttatgtggtatatgctttgatttgaaaacagattcagatatgttcaaaagaaagagttgcaaccacctcttttgtgttgaa |
24976842 |
T |
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| Q |
415 |
tgtatttccaaatatgtggattctcaactcaacaataatgtggttaaggtgacttgt |
471 |
Q |
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| T |
24976841 |
tgtatttccaaatatgtggtttctcaaattaacaacaatgtggttaaggtgacttgt |
24976785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 145 - 471
Target Start/End: Complemental strand, 2166 - 1840
Alignment:
| Q |
145 |
caccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaattcacttcagaaagct |
244 |
Q |
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||||||| |||||| ||||| || |||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| |||||||||||||| |
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| T |
2166 |
caccgctcattctccgcgccactagtgataaaagaaccgtcagaacatgactctgatgcaaagcagaagaaactaaagagaaaatccacttcagaaagct |
2067 |
T |
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| Q |
245 |
acgatgaaaagatgaagaaaccattaatcattgatgacgagccagaagaattcaccactggtatgttaattggtgagtcctcaagaagctcatgtggtat |
344 |
Q |
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| T |
2066 |
acgatgaaaagatgaagaaaccattaatcattgatgaggaaccagaagaattcaccactaagatgttaattggtgaatcctcaagaagctcatgtggtat |
1967 |
T |
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| Q |
345 |
atgctttgatttgaaaactgattttgatatgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtggattctcaactc |
444 |
Q |
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| T |
1966 |
atgctttgatttgaaaactgatttggatatgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtggattctcaactc |
1867 |
T |
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| Q |
445 |
aacaataatgtggttaaggtgacttgt |
471 |
Q |
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| T |
1866 |
aacaataatgtggttaaggtgacttgt |
1840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 145 - 217
Target Start/End: Complemental strand, 2328 - 2256
Alignment:
| Q |
145 |
caccgcttattctcggcgccgctggtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaac |
217 |
Q |
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| T |
2328 |
caccgctcattctccgcgccactagtgataaaagaaccgtcagaacatgactctgatgcaaaggagaagaaac |
2256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 2482 - 2418
Alignment:
| Q |
153 |
attctcggcgccgctggtgataaaagaaccgtcagaacatgattctgatacaaagcagaaaaaac |
217 |
Q |
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| T |
2482 |
attctcggcgccgttagtgataaaagaacagtcagaacatgattctgatgcaaaggagaagaaac |
2418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 2611 - 2560
Alignment:
| Q |
30 |
agattctcaggcaaaggagaagaaaccaaacatgatgaagagaaaaccactt |
81 |
Q |
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| T |
2611 |
agattctaatgcaaaggagaagaaaccaaacatgatgaagagaaaatcactt |
2560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 2447 - 2380
Alignment:
| Q |
26 |
aacaagattctcaggcaaaggagaagaaaccaaacatgatgaagagaaaaccacttcgagatgcctat |
93 |
Q |
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| T |
2447 |
aacatgattctgatgcaaaggagaagaaaccacacatggtgaagagaaaatcacttccagatggctat |
2380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 93
Target Start/End: Complemental strand, 2271 - 2218
Alignment:
| Q |
40 |
gcaaaggagaagaaaccaaacatgatgaagagaaaaccacttcgagatgcctat |
93 |
Q |
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| T |
2271 |
gcaaaggagaagaaaccatacatgttgaagagaaaatcacttccagatggctat |
2218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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