View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19427_high_2 (Length: 447)
Name: NF19427_high_2
Description: NF19427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19427_high_2 |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: scaffold0032 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 44722 - 45137
Alignment:
| Q |
16 |
atgtcatttattgcttatatgtttcccaactatgataagtttaattaccatgatgcagcatctcccatattcaagcagttggacttctgattttagcagc |
115 |
Q |
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| T |
44722 |
atgtcatttattgcttatatgtttcccaactatgataagtttaattaccatgatgtagcatctcccatattcaagcagttggacttctgattttagcagc |
44821 |
T |
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| Q |
116 |
gtttaaagaaattcgccatcgatcaggaaaatatatcttgaagtactgccctagtatcagagtcctgtatnnnnnnnnnnnnnnnnnnagctgttggatg |
215 |
Q |
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| T |
44822 |
gtttaaagaaattcgccatcgatcaggaaaatatatcttgaagtactgccctagtatcagagtcctgtattcatcatcatcatcatcaagctgttggatg |
44921 |
T |
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| Q |
216 |
aagtatgggattgttgtgatgttcatctttatgatgatgttcttaccactggcacactttatggctttaactgataaatgagtatgtgtgggacttctat |
315 |
Q |
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| T |
44922 |
aagtatgggattgttgtgatgttcatctttatgatgatgttcttaccactggcacactttatggctttaactgataaatgagtatgtgtgggacttctat |
45021 |
T |
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| Q |
316 |
aattgatggtagcattgatgcagacgattatcatcatttaataacacttttaaattaataannnnnnnggcggaataaatattttaatttgtatgcagag |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45022 |
aattgatggtagcattgatgcagacgattatcatcatttaataacacttttaaattaataatttttttggcggaataaatattttaatttgtatgcagag |
45121 |
T |
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| Q |
416 |
tgtaaaactatcttac |
431 |
Q |
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| T |
45122 |
tgtaaaactatcttac |
45137 |
T |
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