View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19428_high_13 (Length: 253)

Name: NF19428_high_13
Description: NF19428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19428_high_13
NF19428_high_13
[»] chr3 (3 HSPs)
chr3 (16-236)||(49431443-49431661)
chr3 (70-115)||(30080713-30080758)
chr3 (31-112)||(30681913-30681993)
[»] chr8 (2 HSPs)
chr8 (67-127)||(43950379-43950439)
chr8 (29-86)||(27563022-27563078)
[»] chr5 (3 HSPs)
chr5 (38-86)||(34278717-34278764)
chr5 (56-86)||(26440619-26440649)
chr5 (69-125)||(25773384-25773440)
[»] chr1 (3 HSPs)
chr1 (69-121)||(30005789-30005841)
chr1 (41-86)||(32834860-32834904)
chr1 (29-86)||(43891471-43891527)
[»] chr7 (3 HSPs)
chr7 (66-129)||(42669409-42669472)
chr7 (74-156)||(7380964-7381045)
chr7 (66-126)||(16870652-16870712)
[»] chr6 (3 HSPs)
chr6 (80-126)||(406875-406921)
chr6 (69-126)||(34500902-34500959)
chr6 (38-90)||(24718140-24718191)
[»] chr4 (1 HSPs)
chr4 (59-125)||(19533988-19534054)
[»] chr2 (2 HSPs)
chr2 (38-88)||(14802918-14802967)
chr2 (59-131)||(15300334-15300406)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 49431443 - 49431661
Alignment:
Q  16 ataataatatcaaagacaaatccaacatcttaaatgttactattttgtcgttatatattagtagaaaaatatgataaaagtatgtaatttgaatagtgca 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  49431443 ataataatatcaaagataaatccaacatcttaaatgttactattttgtcgttatatattaatagaaaaatatgataaaagtatgtaatttgaatagtgca 49431542  T
Q  116 tattgtcaaactagatatcttattttgggacgaaggtagtaggatgtttcatattcttatgatacttaaaagtatgtaatttaggtggagtattatttac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||    | || || | ||||||||||    
T  49431543 tattgtcaaactagatatcttattttgggacgaaggtagtaggatgtttcatattcttatgatacttaatt-tatgcggataag-tgaaatattatttac 49431640  T
Q  216 tctgatgtttcactttcttat 236  Q
    |||||||||||||||||||||    
T  49431641 tctgatgtttcactttcttat 49431661  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 30080713 - 30080758
Alignment:
Q  70 atattagtagaaaaatatgataaaagtatgtaatttgaatagtgca 115  Q
    ||||||||||||||||||||| ||||||||| |  |||||||||||    
T  30080713 atattagtagaaaaatatgatcaaagtatgttacgtgaatagtgca 30080758  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 30681913 - 30681993
Alignment:
Q  31 acaaatccaacatcttaaatgttactattttgtcgttatatattagtagaaaaatatgataaaagtatgtaatttgaatagt 112  Q
    |||||| |||||||||| |||||| || ||| || || ||||||| |||||||||||||| || |||||| || ||||||||    
T  30681913 acaaattcaacatcttatatgtta-taatttatctttgtatattattagaaaaatatgatcaaggtatgttatgtgaatagt 30681993  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 43950379 - 43950439
Alignment:
Q  67 tatatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaact 127  Q
    ||||||||||||||||||| || | ||||||||| || ||||||||||| || ||||||||    
T  43950379 tatatattagtagaaaaatttggtcaaagtatgttatgtgaatagtgcacatagtcaaact 43950439  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 27563022 - 27563078
Alignment:
Q  29 agacaaatccaacatcttaaatgttactattttgtcgttatatattagtagaaaaata 86  Q
    |||| |||||||||||||| ||| || |||||| || |||||||||||||||||||||    
T  27563022 agacgaatccaacatcttatatgcta-tattttatctttatatattagtagaaaaata 27563078  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 34278717 - 34278764
Alignment:
Q  38 caacatcttaaatgttactattttgtcgttatatattagtagaaaaata 86  Q
    |||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  34278717 caacatcttatatgtta-tattttgtctttatatattagtagaaaaata 34278764  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 86
Target Start/End: Original strand, 26440619 - 26440649
Alignment:
Q  56 tattttgtcgttatatattagtagaaaaata 86  Q
    |||||||||||||||||||||||||||||||    
T  26440619 tattttgtcgttatatattagtagaaaaata 26440649  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 25773384 - 25773440
Alignment:
Q  69 tatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaa 125  Q
    |||||||||||||||||||| | ||||||||| |  | ||||||||| |||||||||    
T  25773384 tatattagtagaaaaatatggtcaaagtatgttaggtcaatagtgcacattgtcaaa 25773440  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 30005789 - 30005841
Alignment:
Q  69 tatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgt 121  Q
    |||||||||||||||||||||| |||||||||||| | || |||||| |||||    
T  30005789 tatattagtagaaaaatatgattaaagtatgtaatgtcaaaagtgcacattgt 30005841  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 86
Target Start/End: Complemental strand, 32834904 - 32834860
Alignment:
Q  41 catcttaaatgttactattttgtcgttatatattagtagaaaaata 86  Q
    ||||||| |||||| ||||||||| |||||||||||||||||||||    
T  32834904 catcttatatgtta-tattttgtctttatatattagtagaaaaata 32834860  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 43891527 - 43891471
Alignment:
Q  29 agacaaatccaacatcttaaatgttactattttgtcgttatatattagtagaaaaata 86  Q
    |||| |||||||||||||| || ||| |||||||||  ||||||||||||||||||||    
T  43891527 agacgaatccaacatcttatatatta-tattttgtctgtatatattagtagaaaaata 43891471  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 42669409 - 42669472
Alignment:
Q  66 ttatatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaactag 129  Q
    ||||||||| ||||||||||||| | ||||| ||| || ||||||||||| || ||||||||||    
T  42669409 ttatatattggtagaaaaatatggttaaagtgtgttatgtgaatagtgcacatagtcaaactag 42669472  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 7380964 - 7381045
Alignment:
Q  74 tagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaactagatatcttattttgggacgaaggtagta 156  Q
    ||||||||||| ||||||||| ||||| ||||||||| || |||| ||| |||||  |  ||||||||| |||||||||||||    
T  7380964 tagtagaaaaacatgataaaaatatgttatttgaataatgtatatagtc-aactatgtcacttattttgagacgaaggtagta 7381045  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 16870652 - 16870712
Alignment:
Q  66 ttatatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaac 126  Q
    ||||||||||||  | ||||||| | |||||| || |||||||||||||||||||| ||||    
T  16870652 ttatatattagttaacaaatatggtcaaagtaagttatttgaatagtgcatattgtaaaac 16870712  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 406921 - 406875
Alignment:
Q  80 aaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaac 126  Q
    ||||||||||| ||||||| | ||||||||| |||||||||||||||    
T  406921 aaaaatatgattaaagtatatgatttgaataatgcatattgtcaaac 406875  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 34500959 - 34500902
Alignment:
Q  69 tatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaac 126  Q
    |||||||||||||||||||||| ||||||||| |  | || |||||| ||||||||||    
T  34500959 tatattagtagaaaaatatgatcaaagtatgtcaggtcaaaagtgcacattgtcaaac 34500902  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 24718140 - 24718191
Alignment:
Q  38 caacatcttaaatgttactattttgtcgttatatattagtagaaaaatatgat 90  Q
    |||||||||| ||| |||||||| ||| ||||||| |||||||||||||||||    
T  24718140 caacatcttagatgctactattt-gtctttatataatagtagaaaaatatgat 24718191  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 125
Target Start/End: Original strand, 19533988 - 19534054
Alignment:
Q  59 tttgtcgttatatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaa 125  Q
    |||||| || |||||||||||||||||||  | ||||||||| || |||||| |||||||| |||||    
T  19533988 tttgtctttgtatattagtagaaaaatattgtcaaagtatgttatatgaataatgcatattttcaaa 19534054  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 14802918 - 14802967
Alignment:
Q  38 caacatcttaaatgttactattttgtcgttatatattagtagaaaaatatg 88  Q
    |||||||||| ||| || ||||||||| |||||||||||||||||||||||    
T  14802918 caacatcttatatgcta-tattttgtctttatatattagtagaaaaatatg 14802967  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 15300334 - 15300406
Alignment:
Q  59 tttgtcgttatatattagtagaaaaatatgataaaagtatgtaatttgaatagtgcatattgtcaaactagat 131  Q
    |||||| |||||||||||||||||| |||| | ||||||||| || || ||| |||| || |||||| |||||    
T  15300334 tttgtctttatatattagtagaaaattatggttaaagtatgttatgtggataatgcacatggtcaaattagat 15300406  T

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