View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19428_high_14 (Length: 251)

Name: NF19428_high_14
Description: NF19428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19428_high_14
NF19428_high_14
[»] chr6 (6 HSPs)
chr6 (2-241)||(702266-702505)
chr6 (2-241)||(717568-717807)
chr6 (1-241)||(710534-710774)
chr6 (1-241)||(712933-713173)
chr6 (1-241)||(716791-717028)
chr6 (137-241)||(722675-722779)
[»] chr1 (1 HSPs)
chr1 (19-241)||(35313621-35313843)
[»] chr5 (2 HSPs)
chr5 (115-234)||(20357809-20357928)
chr5 (128-234)||(20353927-20354033)
[»] chr4 (3 HSPs)
chr4 (115-234)||(5278442-5278561)
chr4 (115-234)||(5286423-5286542)
chr4 (128-234)||(5282535-5282641)
[»] chr2 (1 HSPs)
chr2 (98-234)||(6235378-6235514)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 702266 - 702505
Alignment:
Q  2 ttctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat 101  Q
    ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702266 ttctagtagttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat 702365  T
Q  102 tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702366 tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 702465  T
Q  202 gtgaatgagaccaattggaaacacaaaaacatctcctttg 241  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  702466 gtgaatgagaccaattggaaacacaaacacatctcctttg 702505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 2 - 241
Target Start/End: Original strand, 717568 - 717807
Alignment:
Q  2 ttctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat 101  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717568 ttctagttgttgtccacccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggat 717667  T
Q  102 tagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 201  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  717668 tagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaa 717767  T
Q  202 gtgaatgagaccaattggaaacacaaaaacatctcctttg 241  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  717768 gtgaatgagaccaattggaaacacaaacacatctcctttg 717807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 710534 - 710774
Alignment:
Q  1 attctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttgga 100  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  710534 attctagttgttgtccacccaaaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttgga 710633  T
Q  101 ttagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattgga 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  710634 ttagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattgga 710733  T
Q  201 agtgaatgagaccaattggaaacacaaaaacatctcctttg 241  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  710734 agtgaatgagaccaattggaaacacaaacacatctcctttg 710774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 713173 - 712933
Alignment:
Q  1 attctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttgga 100  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  713173 attctagttgttgtccacccagaattgtttttgaagattatccactatattattgtcaacttgaaaagctttggtgagaacttctgaagaaatttttgga 713074  T
Q  101 ttagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattgga 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |    
T  713073 ttagatccaaatacagcattagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaactgcatttccatacccaacattcaattgaa 712974  T
Q  201 agtgaatgagaccaattggaaacacaaaaacatctcctttg 241  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  712973 agtgaatgaggccaattggaaacacaaacacatctcctttg 712933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 717028 - 716791
Alignment:
Q  1 attctagttgttgtccacccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttgga 100  Q
    |||||| |||||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||| ||| |||||||||| ||||||||| ||||   ||    
T  717028 attctaattgttgtccaaccagaattgtttctgaagattgtcaactatgttattgtccacttgaagagccttggtgagaagttctgaagaaattt---ga 716932  T
Q  101 ttagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattgga 200  Q
    ||||| ||||||||  | |||  ||| ||||| || | || ||| |||||| ||||||||| |||  |||| ||||||||||  |||| |||   |||||    
T  716931 ttagacccaaatacctccttaataatagtgataactcttgaattatggctgttaagtccagaaatgacaaccgcatttccatcccccatattatgttgga 716832  T
Q  201 agtgaatgagaccaattggaaacacaaaaacatctcctttg 241  Q
    ||||||| |||||||||||||||||||| ||||||||||||    
T  716831 agtgaataagaccaattggaaacacaaagacatctcctttg 716791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 722779 - 722675
Alignment:
Q  137 cctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaaaaacatctc 236  Q
    ||||||||||| ||||||| ||||| ||| ||||| |||||||||| |||   |||    | ||||||||||||||||||||||||||||||||||||||    
T  722779 cctggattttgactgctaaatccagaaattgcaaccgcatttccatctcctgtattatgctcgaagtgaatgagaccaattggaaacacaaaaacatctc 722680  T
Q  237 ctttg 241  Q
    |||||    
T  722679 ctttg 722675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 35313843 - 35313621
Alignment:
Q  19 ccagaattgtttttgaagattgtcaactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggattagatccaaatacagca 118  Q
    ||||||||| |||||||||| ||| | || ||| || || |||||||| |||||||||||||||||  |||| |||  ||| ||||||||||| ||||||    
T  35313843 ccagaattgcttttgaagatagtcgattacatttttatccacttgaaaggctttggtgagaacttccaaagaaattggtggtttagatccaaacacagca 35313744  T
Q  119 ttagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattg 218  Q
    || ||||| || || || || || |||||||| ||||| |||||||| ||||  || |  ||||| || || ||||||||||||||||||||||| ||||    
T  35313743 tttgcaatggtaatcactccagggttttggctactaagaccagcaatggcaatagcctccccataaccaacgttcaattggaagtgaatgagaccgattg 35313644  T
Q  219 gaaacacaaaaacatctcctttg 241  Q
    |||||||||| ||||| ||||||    
T  35313643 gaaacacaaatacatcacctttg 35313621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 20357809 - 20357928
Alignment:
Q  115 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacca 214  Q
    |||||| ||||  ||||| || ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||| || ||||| ||||||    
T  20357809 agcatttgcaacggtgataactcctggattttgactgctaagtccagcaatagcaacggcattgccatatcccacattcagttgaaaatgaataagacca 20357908  T
Q  215 attggaaacacaaaaacatc 234  Q
    ||||| |||||||| |||||    
T  20357909 attgggaacacaaacacatc 20357928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 234
Target Start/End: Complemental strand, 20354033 - 20353927
Alignment:
Q  128 gtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaa 227  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||| || ||||| ||||||||||| |||||||    
T  20354033 gtgattactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagttgaaaatgaataagaccaattgggaacacaa 20353934  T
Q  228 aaacatc 234  Q
    | |||||    
T  20353933 acacatc 20353927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 5278442 - 5278561
Alignment:
Q  115 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacca 214  Q
    |||||| ||||  ||||| || ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||| || ||||| ||||||    
T  5278442 agcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagttgaaaatgaataagacca 5278541  T
Q  215 attggaaacacaaaaacatc 234  Q
    ||||| |||||||| |||||    
T  5278542 attgggaacacaaacacatc 5278561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 5286423 - 5286542
Alignment:
Q  115 agcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagacca 214  Q
    |||||| ||||  ||||| || ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||| ||| || ||||| ||||||    
T  5286423 agcatttgcaacagtgataactcctggattttgactgctaagtccagcaatagcaacggcgttgccatatcccacattcagttgaaaatgaataagacca 5286522  T
Q  215 attggaaacacaaaaacatc 234  Q
    ||||| |||||||| |||||    
T  5286523 attgggaacacaaacacatc 5286542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 128 - 234
Target Start/End: Complemental strand, 5282641 - 5282535
Alignment:
Q  128 gtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaattggaagtgaatgagaccaattggaaacacaa 227  Q
    ||||| || ||||| ||||| ||||||||||||||||||||||| || || ||||||||||||||||  || || ||||| |||||||| || |||||||    
T  5282641 gtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacattcagctgaaaatgaataagaccaatcgggaacacaa 5282542  T
Q  228 aaacatc 234  Q
    | |||||    
T  5282541 acacatc 5282535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 234
Target Start/End: Original strand, 6235378 - 6235514
Alignment:
Q  98 ggattagatccaaatacagcattagcaattgtgattacacctggattttggctgctaagtccagcaatagcaactgcatttccatatcccacattcaatt 197  Q
    |||||||||  ||| | |||||| ||||  ||||| || ||||| ||||| ||||||||||||||||||||||| || || |||||||||||||| | ||    
T  6235378 ggattagatttaaacaaagcatttgcaacggtgataactcctgggttttgactgctaagtccagcaatagcaacagcgttgccatatcccacatttagtt 6235477  T
Q  198 ggaagtgaatgagaccaattggaaacacaaaaacatc 234  Q
    | || ||||| ||||||||||| |||||||| |||||    
T  6235478 gaaaatgaataagaccaattgggaacacaaacacatc 6235514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University