View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19428_high_17 (Length: 240)
Name: NF19428_high_17
Description: NF19428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19428_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 38846767 - 38846560
Alignment:
| Q |
19 |
atatgtgtcaccctctcaatgtttcccactttcttctttatatgttccaaattcccattattattcattacttttccatctccatatggctgaaaataat |
118 |
Q |
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| T |
38846767 |
atatgtgtcaccctctcaatgtttcccactttcttcttaatatgttccaaattcccattattattcattacttttccatctccatatggctgaaaataat |
38846668 |
T |
|
| Q |
119 |
tctcattctcactctcaatctcccataccatgtgacaacaagcaccatgatcatgaacaagtagctggttttgattggatggttcttgtagcagccattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38846667 |
tctcattctcactctcaatctcccataccatgtgacaacaagcaccatgatcatgaacaagtagctggttttgattggatggttcttgtagcagccattt |
38846568 |
T |
|
| Q |
219 |
tatgtgcc |
226 |
Q |
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|||||||| |
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| T |
38846567 |
tatgtgcc |
38846560 |
T |
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