View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19428_low_1 (Length: 1148)

Name: NF19428_low_1
Description: NF19428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19428_low_1
NF19428_low_1
[»] chr1 (8 HSPs)
chr1 (406-838)||(1673541-1673969)
chr1 (839-972)||(1674119-1674251)
chr1 (1084-1148)||(1674364-1674428)
chr1 (18-73)||(1673315-1673370)
chr1 (1083-1148)||(11237705-11237770)
chr1 (1083-1147)||(31622889-31622953)
chr1 (1083-1148)||(23697528-23697593)
chr1 (1086-1146)||(2656161-2656219)
[»] chr2 (7 HSPs)
chr2 (1082-1148)||(25965360-25965426)
chr2 (1083-1148)||(27746930-27746995)
chr2 (1083-1147)||(34424488-34424552)
chr2 (1083-1148)||(12412908-12412973)
chr2 (1083-1148)||(12424968-12425033)
chr2 (1083-1148)||(4959089-4959154)
chr2 (1090-1145)||(7485813-7485868)
[»] chr8 (4 HSPs)
chr8 (1083-1148)||(9455528-9455593)
chr8 (1083-1148)||(2742651-2742716)
chr8 (1083-1148)||(3443431-3443496)
chr8 (1083-1114)||(34146749-34146780)
[»] chr7 (9 HSPs)
chr7 (1083-1148)||(4962661-4962726)
chr7 (1084-1146)||(4678827-4678889)
chr7 (1083-1148)||(24393807-24393872)
chr7 (1083-1140)||(25290925-25290982)
chr7 (1083-1148)||(39434394-39434459)
chr7 (1083-1148)||(46671746-46671811)
chr7 (1083-1148)||(14771141-14771206)
chr7 (1083-1148)||(15221593-15221658)
chr7 (1083-1148)||(15643599-15643664)
[»] chr6 (2 HSPs)
chr6 (1083-1148)||(7972369-7972434)
chr6 (1083-1148)||(21527031-21527096)
[»] chr4 (6 HSPs)
chr4 (1083-1148)||(24538014-24538079)
chr4 (1083-1148)||(38433952-38434017)
chr4 (1083-1146)||(37371135-37371198)
chr4 (1084-1114)||(19443154-19443184)
chr4 (1086-1146)||(45635034-45635092)
chr4 (1083-1112)||(49263547-49263576)
[»] chr3 (4 HSPs)
chr3 (1084-1148)||(25841574-25841638)
chr3 (1090-1148)||(13779113-13779171)
chr3 (1083-1148)||(21959434-21959499)
chr3 (1090-1148)||(7259419-7259476)
[»] chr5 (5 HSPs)
chr5 (1085-1148)||(16366011-16366074)
chr5 (1083-1148)||(20202129-20202194)
chr5 (1083-1148)||(36059662-36059727)
chr5 (1083-1148)||(17558263-17558328)
chr5 (1083-1137)||(14655282-14655335)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1083-1148)||(46027-46092)
[»] scaffold1130 (1 HSPs)
scaffold1130 (1086-1148)||(675-737)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1083-1148)||(271973-272038)


Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 406 - 838
Target Start/End: Original strand, 1673541 - 1673969
Alignment:
Q  406 aaatctctctatgtacatcctcttcaagtctctacgtagaaaactatttttaacatccaatttttgccacaaacatgaaaatctagattcaaatttttac 505  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1673541 aaatctctctatgtacatcctcttcaaatctctgcgtagaaaaatatttttaacatccaatttttgccacaaacatgaaaatctagattcaaatctttac 1673640  T
Q  506 atctttcatttattagagttttcaaagttcagtaagtcacctcacatggtttctgtcagagaattagtttgcatttaagtcaagttcaacgtcataacag 605  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1673641 gtctttcatttattagagttttcaaagttcagtaagtcacctcacatggtttctgtcagagaattagtttgcatttaagtcaagttcaacgtcataacag 1673740  T
Q  606 taccatcagataaccaacttctacaagaaaaaagtttataatgttgttattttcttggtggttgaattgattgagcttccataattcataacacatattc 705  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1673741 taccatcagataaccaacttctacaagaaaaaagtttatagtgttgttattttcttggtggttgaattgattgagctt-cataattcataacacatattc 1673839  T
Q  706 atcacattcactttctttgccccaagcttggttaccttttccttaaaccaaatacagttgacagcgactaaatatttaatcttgtcatctcatgagtcgt 805  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1673840 atcac-ttcactttctttgccccaagcttggttaccttttccttaaaccaaatacagttgacagcgactaaatatttaatcttgtcatctcatgagtcgt 1673938  T
Q  806 gaccttatcaacttagttatctaccttattaat 838  Q
    ||||||||  |||||||||||||||||||||||    
T  1673939 gaccttat--acttagttatctaccttattaat 1673969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 839 - 972
Target Start/End: Original strand, 1674119 - 1674251
Alignment:
Q  839 gtattaaaatgaattataaaatcataaatgttataattattactactggattagttcatctctctttcaaatttgcaaatactagcaataaaggaacagt 938  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  1674119 gtattaaaatgaattataaaatcataaatgttataattattactactagattagttcatctctctttcaaa-ttgcaaatactagcaataaaggaacaat 1674217  T
Q  939 tggatcaacatcttgcaatttactccctccgttc 972  Q
    ||||||||||||||||||||||||||||||||||    
T  1674218 tggatcaacatcttgcaatttactccctccgttc 1674251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 1084 - 1148
Target Start/End: Original strand, 1674364 - 1674428
Alignment:
Q  1084 acacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1674364 acacattttatcttttcaataaatttaatatctaacaaacggttgttagttactactctctttct 1674428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 1673315 - 1673370
Alignment:
Q  18 ttaaaaacttgtattttatataacaaatgatgaatatacatagatagggacaatga 73  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1673315 ttaaaaacttgtattttatataacaaatgatgaatatacatggatagggacaatga 1673370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 11237705 - 11237770
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||||||||||    
T  11237705 cacacattttatctttccaataaatttaatatgtaacgaacaattgttagttactactctctttct 11237770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1083 - 1147
Target Start/End: Original strand, 31622889 - 31622953
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttc 1147  Q
    |||||| ||||||||| ||||||||||||||| |||| |||  ||||||||||||||| ||||||    
T  31622889 cacacactttatctttacaataaatttaatatgtaaccaacaattgttagttactactatctttc 31622953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 23697528 - 23697593
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||||||||||||||||||| ||| ||||  ||||||| || |||||| |||||    
T  23697528 cacacactttatctttccaataaatttaatatgtaagaaacaattgttagctattactctatttct 23697593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1086 - 1146
Target Start/End: Complemental strand, 2656219 - 2656161
Alignment:
Q  1086 acattttatctttccaataaatttaatatctaacaaacggttgttagttactactctcttt 1146  Q
    |||||| ||||||| ||||||||||||||   ||||||  |||||||||||||||||||||    
T  2656219 acatttgatctttcaaataaatttaatatg--acaaacaattgttagttactactctcttt 2656161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 1e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 1082 - 1148
Target Start/End: Original strand, 25965360 - 25965426
Alignment:
Q  1082 acacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    ||||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  25965360 acacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttct 25965426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Complemental strand, 27746995 - 27746930
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  27746995 cacacactttatttttccaataaatttaatatttaacaaacaattgttagttactactctctttct 27746930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1083 - 1147
Target Start/End: Original strand, 34424488 - 34424552
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttc 1147  Q
    |||||| ||||||||||||||||||||||||| ||||||||  ||||||||||||||||| ||||    
T  34424488 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctatttc 34424552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Complemental strand, 12412973 - 12412908
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||||||||||||||||||  | ||||||  |||||||||||||||||||||||    
T  12412973 cacacactttatctttccaataaatttaatacgtgacaaacaattgttagttactactctctttct 12412908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Complemental strand, 12425033 - 12424968
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||||||||||||||||||  | ||||||  |||||||||||||||||||||||    
T  12425033 cacacactttatctttccaataaatttaatacgtgacaaacaattgttagttactactctctttct 12424968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 4959089 - 4959154
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| |||||||||||| |||||||||||| |||||||   || ||||||||||||||||||||    
T  4959089 cacacactttatctttccattaaatttaatatgtaacaaataattattagttactactctctttct 4959154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1090 - 1145
Target Start/End: Original strand, 7485813 - 7485868
Alignment:
Q  1090 tttatctttccaataaatttaatatctaacaaacggttgttagttactactctctt 1145  Q
    ||||||||| ||||||||||| ||| ||||||||  ||||||||||||||||||||    
T  7485813 tttatctttgcaataaatttagtatgtaacaaacaattgttagttactactctctt 7485868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 5e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Complemental strand, 9455593 - 9455528
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  9455593 cacacattttatttttccaataaatttaatatgtaacaaacaattgttagttactactctctttct 9455528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 2742651 - 2742716
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||||||||| || |||||||||    
T  2742651 cacacattttatctttccaataaatttaatatgtaacaaacaattgttagttagtagtctctttct 2742716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 3443431 - 3443496
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||| ||||||||||||||||| ||||||||  || | |||||||||||| |||||    
T  3443431 cacacactttatctatccaataaatttaatatgtaacaaacaattatgagttactactctttttct 3443496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1083 - 1114
Target Start/End: Complemental strand, 34146780 - 34146749
Alignment:
Q  1083 cacacattttatctttccaataaatttaatat 1114  Q
    ||||||||||||||||||||||||||||||||    
T  34146780 cacacattttatctttccaataaatttaatat 34146749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 5e-19; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 4962661 - 4962726
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  4962661 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttct 4962726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1084 - 1146
Target Start/End: Complemental strand, 4678889 - 4678827
Alignment:
Q  1084 acacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctcttt 1146  Q
    ||||| ||||||||||||||||||||||||| ||||||||  || ||||||||||||||||||    
T  4678889 acacactttatctttccaataaatttaatatgtaacaaacaattattagttactactctcttt 4678827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 24393807 - 24393872
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||||||||||||||||||| ||||||||  || ||| ||||||||||||||||    
T  24393807 cacacactttatctttccaataaatttaatatgtaacaaacaattattaattactactctctttct 24393872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1083 - 1140
Target Start/End: Complemental strand, 25290982 - 25290925
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactact 1140  Q
    ||||||||||||  |||||||||||||||||| ||||||||  |||||||||||||||    
T  25290982 cacacattttatgattccaataaatttaatatgtaacaaacaattgttagttactact 25290925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Complemental strand, 39434459 - 39434394
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||||||||||||||||||| |||||||   || |||||| |||||||||||||    
T  39434459 cacacactttatctttccaataaatttaatatgtaacaaataatttttagttgctactctctttct 39434394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 46671746 - 46671811
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||| ||||||||||||||||| | ||||||||  ||||||||||| |||||||||||    
T  46671746 cacacactttatttttccaataaatttaatgtgtaacaaacaattgttagttacaactctctttct 46671811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 14771141 - 14771206
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||| ||||||||| ||||| |||||||   || ||||||||||||||||||||    
T  14771141 cacacactttatcttttcaataaattaaatatgtaacaaaaaattcttagttactactctctttct 14771206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 15221593 - 15221658
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||| ||||||||| ||||| |||||||   || ||||||||||||||||||||    
T  15221593 cacacactttatcttttcaataaattaaatatgtaacaaaaaattcttagttactactctctttct 15221658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Complemental strand, 15643664 - 15643599
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||||||||||||||||||||||||||||| ||| |||   || |||||||| | |||||||||    
T  15643664 cacacattttatctttccaataaatttaatatttaagaaaaaattattagttacgaatctctttct 15643599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 7972369 - 7972434
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||||||||||||||||||||||||||||| ||||||||  ||||| |||||||||||||||||    
T  7972369 cacacattttatctttccaataaatttaatatgtaacaaaccattgttggttactactctctttct 7972434  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 21527031 - 21527096
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||| ||||||||||||||| ||||||||  ||||| ||||||||||| |||||    
T  21527031 cacacactttatcttttcaataaatttaatatgtaacaaacaattgttggttactactctttttct 21527096  T

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Target: chr4 (Bit Score: 50; Significance: 5e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 24538014 - 24538079
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  24538014 cacacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttct 24538079  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 38433952 - 38434017
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||||||||||||||||||| ||||||||  |||| |||||||||||| |||||    
T  38433952 cacacactttatctttccaataaatttaatatgtaacaaacaattgtgagttactactctatttct 38434017  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 1083 - 1146
Target Start/End: Original strand, 37371135 - 37371198
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctcttt 1146  Q
    |||||| ||||||||| |||||||||||||||  |||||||  |||||||||||||||||||||    
T  37371135 cacacactttatcttttcaataaatttaatatacaacaaacaattgttagttactactctcttt 37371198  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1084 - 1114
Target Start/End: Original strand, 19443154 - 19443184
Alignment:
Q  1084 acacattttatctttccaataaatttaatat 1114  Q
    |||||||||||||||||||||||||||||||    
T  19443154 acacattttatctttccaataaatttaatat 19443184  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1086 - 1146
Target Start/End: Original strand, 45635034 - 45635092
Alignment:
Q  1086 acattttatctttccaataaatttaatatctaacaaacggttgttagttactactctcttt 1146  Q
    |||||| ||||||| |||||||||||||  | ||||||  |||||||||||||||||||||    
T  45635034 acatttgatctttcaaataaatttaata--tgacaaacaattgttagttactactctcttt 45635092  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1083 - 1112
Target Start/End: Complemental strand, 49263576 - 49263547
Alignment:
Q  1083 cacacattttatctttccaataaatttaat 1112  Q
    ||||||||||||||||||||||||||||||    
T  49263576 cacacattttatctttccaataaatttaat 49263547  T

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Target: chr3 (Bit Score: 49; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1084 - 1148
Target Start/End: Original strand, 25841574 - 25841638
Alignment:
Q  1084 acacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    ||||||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||||||    
T  25841574 acacattttatctttccaataaatttaataaataacaaacaattgttagttactactctctttct 25841638  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1090 - 1148
Target Start/End: Complemental strand, 13779171 - 13779113
Alignment:
Q  1090 tttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    ||||||||||||||||||||||||| ||||| ||  |||||||||||||||||||||||    
T  13779171 tttatctttccaataaatttaatatgtaacagacaattgttagttactactctctttct 13779113  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 21959434 - 21959499
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||| |||| ||||||| |||||| ||||||||  |||||||||||||||||||||||    
T  21959434 cacacactttatatttctaataaatataatatgtaacaaacaattgttagttactactctctttct 21959499  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1090 - 1148
Target Start/End: Original strand, 7259419 - 7259476
Alignment:
Q  1090 tttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    ||||||||||||||||| ||||||| ||||||||  ||||||||||||| |||||||||    
T  7259419 tttatctttccaataaaattaatatgtaacaaacaattgttagttacta-tctctttct 7259476  T

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Target: chr5 (Bit Score: 48; Significance: 7e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 1085 - 1148
Target Start/End: Complemental strand, 16366074 - 16366011
Alignment:
Q  1085 cacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  16366074 cacactttatctttccaataaatttaatatgtaacaaacaattgttagttactactctctttct 16366011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Complemental strand, 20202194 - 20202129
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||| ||||||||||||||| ||||||||  |||||||||||||||||||||||    
T  20202194 cacacactttatcttttcaataaatttaatatgtaacaaacaattgttagttactactctctttct 20202129  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 36059662 - 36059727
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||||||||||||||||||| ||| ||||  |||||||||||||||| ||||||    
T  36059662 cacacactttatctttccaataaatttaatatgtaagaaacaattgttagttactactcactttct 36059727  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Complemental strand, 17558328 - 17558263
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||| ||||||||||| | ||||| ||||||||  |||||||||||||||||||||||    
T  17558328 cacacactttatatttccaataaactaaatatttaacaaacaattgttagttactactctctttct 17558263  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1083 - 1137
Target Start/End: Complemental strand, 14655335 - 14655282
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttact 1137  Q
    |||||| |||||||||||||||| |||||||| ||||||||  ||||||||||||    
T  14655335 cacacactttatctttccaataa-tttaatatgtaacaaacaattgttagttact 14655282  T

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Target: scaffold0006 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 46027 - 46092
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||||||||||||||||||||||||||||| ||||||||  || ||||| ||||||||||||||    
T  46027 cacacattttatctttccaataaatttaatatgtaacaaacaatttttagtgactactctctttct 46092  T

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Target: scaffold1130 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 1086 - 1148
Target Start/End: Complemental strand, 737 - 675
Alignment:
Q  1086 acattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    ||||||||||||||||||||||||||||| ||||||||  || || |||||||||||||||||    
T  737 acattttatctttccaataaatttaatatgtaacaaacaattttttgttactactctctttct 675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 1083 - 1148
Target Start/End: Original strand, 271973 - 272038
Alignment:
Q  1083 cacacattttatctttccaataaatttaatatctaacaaacggttgttagttactactctctttct 1148  Q
    |||||| ||||||||| ||||||||||||||| ||||||||  || |||||||||||||| |||||    
T  271973 cacacactttatcttttcaataaatttaatatgtaacaaacaattattagttactactctttttct 272038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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