View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19428_low_18 (Length: 239)
Name: NF19428_low_18
Description: NF19428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19428_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 23739442 - 23739301
Alignment:
| Q |
19 |
atctaagcattagcttaacggttgaaatcaaatcgtcgctgaaatgggtcgtcactgcaactttgagttatagatcagccaccgagtccaaagccattga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23739442 |
atctaagcattagcttaacggttgaaatcaaatcgtcgctgaaatgggtcgtcactgcaactttgagttatggatcagccaccgagtccaaagccattgg |
23739343 |
T |
|
| Q |
119 |
agttgaaaaatgatgatgtagaaaaagaggatagttaaatca |
160 |
Q |
| |
|
|||||||||||||||| |||||||||||| || ||||||||| |
|
|
| T |
23739342 |
agttgaaaaatgatgacgtagaaaaagagaatggttaaatca |
23739301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 26829998 - 26829952
Alignment:
| Q |
161 |
tttccataattgattgggaagattctctcacttaatttagccctaga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26829998 |
tttccataattgattgggaagattctctcacttaatttagccctaga |
26829952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 47964226 - 47964326
Alignment:
| Q |
22 |
taagcattagcttaacggttgaaatcaaatcgtcgctgaaatgggtcgtcactgcaactttgagttatagatcagccaccgagtccaaagccattgaagt |
121 |
Q |
| |
|
|||||| || ||||||||| |||||||||| || | ||||||||||| |||| |||||||||||||| |||| |||||| ||| |||||||| |||||| |
|
|
| T |
47964226 |
taagcactaccttaacggtcaaaatcaaatcatcaccgaaatgggtcgccactacaactttgagttattgatctgccaccaagttcaaagccagtgaagt |
47964325 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
47964326 |
t |
47964326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 13604378 - 13604476
Alignment:
| Q |
61 |
aatgggtcgtcactgcaactttgagttatagatcagccaccgagtccaaagccattgaagttgaaaaatgatgatgtagaaaaagaggatagttaaatca |
160 |
Q |
| |
|
||||||||| ||||| |||||||||||| |||||| |||||| | |||||||| |||||| ||||||||| |||| |||||||||| ||||||||| |
|
|
| T |
13604378 |
aatgggtcgccactgtgactttgagttatggatcagtcaccgacttcaaagccagctaagttggaaaatgatggcgtag-aaaagaggatggttaaatca |
13604476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 14458631 - 14458727
Alignment:
| Q |
18 |
aatctaagcattagcttaacggttgaaatcaaatcgtcgctgaaatgggtcgtcactgcaactttgagttatagatcagccaccgagtccaaagcca |
114 |
Q |
| |
|
||||||||||||| |||||| || |||| |||||| || ||||||||| | ||||| ||||| |||||| |||||||||| |||| |||||||| |
|
|
| T |
14458631 |
aatctaagcattaccttaacagtcaaaattgaatcgttgccgaaatgggtagccactgtgactttcagttatggatcagccactgagttcaaagcca |
14458727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University