View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19428_low_19 (Length: 238)
Name: NF19428_low_19
Description: NF19428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19428_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 713166 - 713388
Alignment:
| Q |
1 |
actagaattgcaggctgtgatatgtgcttgaatcactaaatttattgttaaatttgttctttattttaccctatgatattgttatatttactagaagact |
100 |
Q |
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| T |
713166 |
actagaattgcaggctgtgatatgtgcttgaatcactaaatttattgttaaatttgttctttattttaccctatgatattgttatatttactaaaagact |
713265 |
T |
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| Q |
101 |
agaataaaattaaatgtaaggttggattcttatattcttatctaaatcatttgaataaaaacgtttagttttataggctacttggagcaacctattatta |
200 |
Q |
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| T |
713266 |
agaataaaattaaatgtaaggttggattcttatattcttatctaaatcatttgaataaaaacgtttagttttataggctacttggagcaacctattatta |
713365 |
T |
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| Q |
201 |
tttaagtttttgatcaagtattt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
713366 |
tttaagtttttgatcaagtattt |
713388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 710503 - 710345
Alignment:
| Q |
74 |
tgatattgttatatttactagaagactagaataaaattaaatgtaaggttggat---tcttatattcttatctaaatcatttgaataaaaacgtttagtt |
170 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||| || |
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| T |
710503 |
tgatattgttatatttactaaaagattagaataaaattaaatgtaaggttggatatatcttgtattcttatctgaatcatttgaataaaaatgtttattt |
710404 |
T |
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| Q |
171 |
t--tataggctacttggagcaaccta----ttattatttaagtttttgatcaagtattt |
223 |
Q |
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| ||||||||||||| | ||||||| ||||||| |||||||||||||| |||||| |
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| T |
710403 |
ttctataggctacttgcatcaacctattatttattatataagtttttgatcatgtattt |
710345 |
T |
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