View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19428_low_2 (Length: 843)

Name: NF19428_low_2
Description: NF19428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19428_low_2
NF19428_low_2
[»] chr1 (2 HSPs)
chr1 (1-829)||(39953961-39954789)
chr1 (46-181)||(39954705-39954837)
[»] chr7 (2 HSPs)
chr7 (571-705)||(43948528-43948662)
chr7 (365-438)||(43948316-43948389)


Alignment Details
Target: chr1 (Bit Score: 805; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 805; E-Value: 0
Query Start/End: Original strand, 1 - 829
Target Start/End: Complemental strand, 39954789 - 39953961
Alignment:
Q  1 ctgtgcttcattttctttctcgagttgtttaatctcgtcccttaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgca 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954789 ctgtgcttcattttctttctcgagttgtttaatctcgtccctcaacttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgca 39954690  T
Q  101 ttattcactttcttcagttgttctatttcttccctcaacttctttactacttcattactaatggtctctttctgcttgagtttgtccttatgcgcttcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954689 ttattcactttcttcagttgttctatttcttccctcaacttctttactacttcattactaatggtctctttctgcttgagtttgtccttatgcgcttcat 39954590  T
Q  201 tctcttttctgagtagttctatctcttctcttaatttcattacttcatcaagaatgtcatctttctgcttgatgtgttccttatgagttttcttctcttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954589 tctcttttctgagtagttctatctcttctcttaatttcattacttcatcaagaatgtcatctttctgcttgatgtgttccttatgagttttcttctcttc 39954490  T
Q  301 accgagtctctcagtttcgcttgtcagcttcatcacttcatttgcatccacagactgaacttcctcttcatgctcaggatcatcaatttccgatttcaca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954489 accgagtctctcagtttcgcttgtcagcttcatcacttcatttgcatccacggactgaacttcctcttcatgctcaggatcatcaatttccgatttcaca 39954390  T
Q  401 gattcctccacatcacaactctcagaatagctatcatacccacgaccatcatcaaaactcaccaacttctctggttgagaatgcttaagtgaagcagaag 500  Q
    |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954389 gattcctctacatcgcaactctcagaatagctatcatacccacgatcatcatcaaaactcaccaacttctctggttgagaatgcttaagtgaagcagaag 39954290  T
Q  501 gggtgagcaggcgaattccggattcaggcctgacttgatcaaaccgttctgctaacaagcggtgtttcctatagaaatcttcaaccatgctcacaagctc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954289 gggtgagcaggcgaattccggattcaggcctgacttgatcaaaccgttcagctaacaagcggtgtttcctatagaaatcttcaaccatgctcacaagctc 39954190  T
Q  601 tggcctcttcttgtaaaacatctcagctctttgtgcaaaggaatctgcatctccttcaattaatttcaacattgcctttgtcttctcattcagctctgcc 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954189 tggcctcttcttgtaaaacatctcagctctttgtgcaaaggaatctgcatctccttcaattaatttcaacattgcctttgtcttctcattcagctctgcc 39954090  T
Q  701 ataaataaacaaccatacacacatattacttaacaataaatcacgttaattatttacactctggtatttgttcacaaatcacaaaagcctagataccata 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954089 ataaataaacaaccatacacacatattacttaacaataaatcacgttaattatttacactctggtatttgttcacaaatcacaaaagcctagataccata 39953990  T
Q  801 tgcaaattgcatagggaaacaaccaaaag 829  Q
    |||||||||||||||||||||||||||||    
T  39953989 tgcaaattgcatagggaaacaaccaaaag 39953961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 39954837 - 39954705
Alignment:
Q  46 cttcattacgtcattacaaatggtatctttctgattgagtccatccttctgtgcattattcactttcttcagttgttctatttcttccctcaacttcttt 145  Q
    ||||||||| ||||||   |||||| ||||||| |||||| ||| ||||||||| | |||  ||||||  |||||||  || || ||||||||||||       
T  39954837 cttcattacttcattattgatggtacctttctgcttgagttcattcttctgtgcttcattttctttctcgagttgtttaatctcgtccctcaacttc--- 39954741  T
Q  146 actacttcattactaatggtctctttctgcttgagt 181  Q
    | ||| ||||||| |||||| |||||||| ||||||    
T  39954740 attacgtcattacaaatggtatctttctgattgagt 39954705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 3e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 571 - 705
Target Start/End: Original strand, 43948528 - 43948662
Alignment:
Q  571 atagaaatcttcaaccatgctcacaagctctggcctcttcttgtaaaacatctcagctctttgtgcaaaggaatctgcatctccttcaattaatttcaac 670  Q
    ||||||||||||||||||||| ||||| || || | |||||||||| ||||||| || | || ||||||||||||||||||| |||||||||| || |||    
T  43948528 atagaaatcttcaaccatgctaacaagttcgggtcgcttcttgtaatacatctctgcacgttttgcaaaggaatctgcatcttcttcaattaactttaac 43948627  T
Q  671 attgcctttgtcttctcattcagctctgccataaa 705  Q
    ||||| ||||||||||| || |||||||| |||||    
T  43948628 attgcatttgtcttctcgtttagctctgcaataaa 43948662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 438
Target Start/End: Original strand, 43948316 - 43948389
Alignment:
Q  365 tcttcatgctcaggatcatcaatttccgatttcacagattcctccacatcacaactctcagaatagctatcata 438  Q
    |||||||||||||||||||||| ||| |||| || ||| || || || ||| || ||||||||||| |||||||    
T  43948316 tcttcatgctcaggatcatcaacttcggattccatagactcgtctacgtcaaaattctcagaataggtatcata 43948389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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