View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19428_low_5 (Length: 495)
Name: NF19428_low_5
Description: NF19428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19428_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 24379881 - 24379408
Alignment:
| Q |
18 |
gacacatgtgattacatacatccaattaattcattttctcagattattaccaatatcaacgtgtcagtgagtgtctttctgatgtccgcgtttgttattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
24379881 |
gacacatgtgattacatacatccaattaattcattttctcagattattaccaatatcaacgtgtcagtgagtgtctttctgaagtctgcgtttgttattc |
24379782 |
T |
|
| Q |
118 |
gtagatattaatcacattgtcgcgttttgccaattagcacttaggacatgaaatttataagtatcctaaattcttttacttagtaggcacattgtggcgt |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24379781 |
gtagatattaatcacattgtcgcattttgccaattagcacttagcacatgaaatttataagtatcctaaattcttttacttagtaggcacattgtggcgt |
24379682 |
T |
|
| Q |
218 |
gttcaatgtccttgtgagtgcttcatagttcttaaacattgaatagagagtataagttggaagaatatactaacaatttttctcttcggtttactcctct |
317 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24379681 |
gttcaatgtccttgtcagtgcttcatagttcttaaacattgaatagagagtataagttggaagaatatactaacaatttttctcttcggtttactcctct |
24379582 |
T |
|
| Q |
318 |
tggagtttttacctgtttccttgacatcactcctctcatcttctgaaataatcaaacacacgaatgttagaaaggaaaaattcaaccaattgcgaatgaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24379581 |
tggagtttttacctgtttccttgacatcactcctctcatcttctgaaataatcaaacacacgaatgttagaaaggaaaaattcaactaattgcgaatgaa |
24379482 |
T |
|
| Q |
418 |
gcaaagactctcaccaatagtcaaaacgcgagataaagagcttgaatactctagtgcaacttcctttgcttctc |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24379481 |
gcaaagactctcaccaatagtcaaaacgcgagataaagagcttgaatactctagtgcaacttcctttgcttctc |
24379408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 25799187 - 25799145
Alignment:
| Q |
35 |
acatccaattaattcattttctcagattattaccaatatcaac |
77 |
Q |
| |
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|||| ||||||||||||||||||| |||||||||||| ||||| |
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| T |
25799187 |
acattcaattaattcattttctcaaattattaccaatgtcaac |
25799145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 26698201 - 26698235
Alignment:
| Q |
34 |
tacatccaattaattcattttctcagattattacc |
68 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
26698201 |
tacattcaattaattcattttctcagattattacc |
26698235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 34598578 - 34598546
Alignment:
| Q |
34 |
tacatccaattaattcattttctcagattatta |
66 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
34598578 |
tacatccaattaattcattttctcaaattatta |
34598546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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