View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19428_low_7 (Length: 394)
Name: NF19428_low_7
Description: NF19428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19428_low_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 394
Target Start/End: Complemental strand, 34612342 - 34611960
Alignment:
| Q |
11 |
cagagaaccatatcaataaagaagaagaattggtgatgacttataaatttatacaaaactactagtggccacattgaagcaactttcaaataatgcatcc |
110 |
Q |
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| T |
34612342 |
cagacaaccatatcaataaagaagaagaattggtgatgacttataaatttatacaaaactactagtggccacattgaagcaactttcaaataatgcatcc |
34612243 |
T |
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| Q |
111 |
ttggaggctcaaccaattcaatctcaaatgtatcagtgggattattattatgcagtcacccaaaaaagcatccttggaggttcaagaaatccatctccaa |
210 |
Q |
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| T |
34612242 |
ttggaggctcaaccaattca-tctcaaatgtatcagtgggattattattatgcagtcacccaaaaaagcatccttggaggttcaagaaatccatctccaa |
34612144 |
T |
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| Q |
211 |
caattacttgtaatttgattttatggagacaacacacaatctgcttgtaaatgcttcttgtaatctagtgatttacataggagttcttttggttaaagta |
310 |
Q |
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| T |
34612143 |
caattacttgtaatttgattttatggagacaacacacaatctgcttgtaaatgcttcttgtaatctagtgatttacataggagttcttttggttaaagtt |
34612044 |
T |
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| Q |
311 |
taacttagccaaacatcaaatttgaatgtaataattaaccttagtttatttaatttgaggtagaaatttctattgatgtatact |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34612043 |
taacttagccaaacatcaaatttgaatgtaataattaaccttagtttatttgatttgaggtagaaatttctattgatgtatact |
34611960 |
T |
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