View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19429_high_1 (Length: 476)
Name: NF19429_high_1
Description: NF19429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19429_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 213 - 467
Target Start/End: Original strand, 34097813 - 34098067
Alignment:
| Q |
213 |
caagatgcatgttaatataaggagttaaaaagtgtttctttttccatgtagtaagagttgtatggcagagtggctgcctgtggcaaacatgctatatctc |
312 |
Q |
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| T |
34097813 |
caagatgcatgttaatataaggagttaaaaagtgtttctttttccatgtagtaagagttgtatggcagagtggctgcctgtggcaaacatgctatatctc |
34097912 |
T |
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| Q |
313 |
tttgttctacttattatgaccacctttttaccttttaacttttctgtaatctctcttctttaggtaaaactgcaccctaatatctctccctatgttctct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34097913 |
tttgttctacttattatgaccacctttttaccttttaacttttctgtaatctctcttctttaggtaaaactgcaccctaatatctctccctatgttctct |
34098012 |
T |
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| Q |
413 |
tttcttactcacagttcaaacataggactacatcacaattcttttcttctctctc |
467 |
Q |
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| T |
34098013 |
tttcttactcacagttcaaacataggactacatcacaattcttttcttctctctc |
34098067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 34097620 - 34097780
Alignment:
| Q |
20 |
ggcaactctgtcatgccgtttatgggagtcaagtaatgcctatagagaatgctccnnnnnnnnnnnnnnnnnntattcatcaaaatagatgccaatgcta |
119 |
Q |
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| T |
34097620 |
ggcaactctgtcatgccgtttatgggagtcaagtaatgcctatagagaatgctccaaaaaacgtgaaaaaaaatattcatcaaaatagatgccaatgcta |
34097719 |
T |
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| Q |
120 |
gaagaccctattaacattggcatttgcatcttgtacctaataagggtataaaagcataggg |
180 |
Q |
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| T |
34097720 |
gaagaccctattaacattggcatttgcatcttgtacctaataagggtataaaagcataggg |
34097780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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