View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19429_high_2 (Length: 403)
Name: NF19429_high_2
Description: NF19429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19429_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 73 - 401
Target Start/End: Complemental strand, 38248601 - 38248272
Alignment:
| Q |
73 |
ggtgaccgaactgtaaaggttaactatagttttcctgagatgccttagtttgttttgaggtgcgcgtatatatagatgtttaaattttgaaatatgaaac |
172 |
Q |
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| T |
38248601 |
ggtgaccgaactgtaaaggttaactatagttttcctgagatgccttagtttgttttgaggtgcacgtatatatagatgtttaaattttgaaatatgaaac |
38248502 |
T |
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| Q |
173 |
cctaggcttaaacaaaaagtaatgtttattatgaaaacaaatcttttcaaacttgaaaagataaaacgggtatcttgggggcaaagataagcctcggtaa |
272 |
Q |
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| T |
38248501 |
cctaggcttaaacaaaaagtaatgtttattatgaaaacaaatcttttcaaacttgaaaagataaaacgggtatcttgggggcaaagataagcctcggtaa |
38248402 |
T |
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| Q |
273 |
caaac---tatgtaaaaaaataaagatgaaaataaaacaaacnnnnnnnnnnnngaaggaaaaacaaactcttttattttatttttgggaacaattatgt |
369 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38248401 |
caaactattatgtaaaaaaataaagatgaaaataaaacaaac--ttttttttttgaaggaaaaacaaactcttttattttatttttgggaacaattatgt |
38248304 |
T |
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| Q |
370 |
agtagttccttcctccctcaactttttattct |
401 |
Q |
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||||||||||||||||||| ||||| |||||| |
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| T |
38248303 |
agtagttccttcctccctccactttgtattct |
38248272 |
T |
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