View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19429_high_4 (Length: 344)
Name: NF19429_high_4
Description: NF19429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19429_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 9451888 - 9451571
Alignment:
| Q |
1 |
tttcccatttaacaagaaaaaggatgacgacaaagggaaggagaaagtgcaagagatggcttgactgttatgtcattttgttcaacacaaaacttgttgt |
100 |
Q |
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| T |
9451888 |
tttcccatttaacaagaaaaaggatgacgacaaagggaaggagaaagtgcaagagatggcttgactgttatgtcattttgttcaacacaaaacttgttgt |
9451789 |
T |
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| Q |
101 |
gtttggattaaccgtagaaatatgttataataaatatcaactatgtataaatcatttcaattttcgcagaagttgcatattgtatacataaaagcatatt |
200 |
Q |
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| T |
9451788 |
gtttggattaaccgtagaaatatgttataataaatatcaactatgtataaatcatttcaattttcgcagaagttgcatattgtatacataaaagcatatt |
9451689 |
T |
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| Q |
201 |
tgtatacaatgttgtataaatgatttcaattgtcacaaaacttgttttgtttggattaactgtaatagaaatctggaggatataaaccaaactaaataaa |
300 |
Q |
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| T |
9451688 |
tgtatacaatgttgtataaatgatttcaattgtcacaaaacttgttttgtttggattaactgtaatagaaatctggaggatataaaccaaactaaataaa |
9451589 |
T |
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| Q |
301 |
aatacactgttagttttt |
318 |
Q |
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| T |
9451588 |
aatacactgttagttttt |
9451571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 9440662 - 9440567
Alignment:
| Q |
1 |
tttcccatttaacaagaaaaaggatgacgacaaagggaaggagaaagtgcaagagatggcttgactgttatgtcattttgttcaacacaaaacttgt |
97 |
Q |
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| T |
9440662 |
tttcccatttaacaagaaaaaggatgatgacaaagggaaggaggaagtgaaacacatagcttgattgttatgtc-ttttgttcaagacacaacttgt |
9440567 |
T |
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