View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19429_high_5 (Length: 291)
Name: NF19429_high_5
Description: NF19429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19429_high_5 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 30552217 - 30552492
Alignment:
| Q |
11 |
aagaaaatgaagaagaatattatctagccctttacatataataaattgtactgaatttcataaaaaagaaaagagaaatggtatgaaatttaccacaagt |
110 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30552217 |
aagaatatgaagaagaatattgtctagccctttacatataataaattgtactgaatttcataaaaaagaaaagagaaatggtatgaaatttaccacaagt |
30552316 |
T |
|
| Q |
111 |
ggaataaatggaagccagtagtaattataaaactctgcaaataaaatgaaattactgttaaatactcataattttgttgcaaaacnnnnnnnnnctttta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30552317 |
ggaataaatggaagccagtagtaattataaaactctgcaaataaaatgaaattactgttaaatactcataattttgttgcaaaac-aaaaaaaactttta |
30552415 |
T |
|
| Q |
211 |
tgctactaaagtaaacatacaaagtaccaagnnnnnnnnnnnnncttataagtaaaataacaaagggacatgattagttac |
291 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30552416 |
tgctactaaagttaacatac-aagtaccaagaaaaaaaaaat---ttataagtaaaataacaaagggacatgattagttac |
30552492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University