View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19429_high_6 (Length: 268)
Name: NF19429_high_6
Description: NF19429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19429_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 30552485 - 30552735
Alignment:
| Q |
1 |
ttagttacaagtgacaagtttaa-----aaaatgtcataccgtgtgcgctaaggaatatgaaaaatatggaaaaaagccagatccaaaacctgcaagagt |
95 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30552485 |
ttagttacaagtgacaagtttaatatgtaaaatgacataccgtgtgcgctaaggaatatgaaaaatatggaaaaaagccagatccaaaacctgcaagagt |
30552584 |
T |
|
| Q |
96 |
atcaaaagattagttaatcaagattgtttagtcttgtataatatacttttgaaattactaaagaatctattttgtaaatatttatgtagctcagttatat |
195 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30552585 |
atcaaaagattagttaatcaagatagttt-----tgtataatatacttttgaaattactaaagaatctattttgtaaatatttatgtagctcagttatat |
30552679 |
T |
|
| Q |
196 |
tttctgcttgtgtccatattataattataaaccttgtgtacaaatatatacttctt |
251 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
30552680 |
tttctgcttgtgtccatattataattagaaaccttgcgtacaaatatatacttctt |
30552735 |
T |
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