View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19429_low_11 (Length: 234)
Name: NF19429_low_11
Description: NF19429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19429_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 36995213 - 36994992
Alignment:
| Q |
13 |
agttactaaccaacaagagacatcgagcatacacgtgtaaaagtattctcacaaggccaccacgtgttctatatgatgtaacacgcatacctgaaaacaa |
112 |
Q |
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| T |
36995213 |
agttactatccaacaagagacatcgagcatacacgtgtaaaagtattctcacaaggccaccacgtgttctatatgatgtaacacgcatacctgaaaacaa |
36995114 |
T |
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| Q |
113 |
tttacacctaaatctatttaatggatagaatgcatgtgctgttcaacatcctggtaaagaaaagaaactgataaaagaccaaagaattgattgatagttg |
212 |
Q |
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| T |
36995113 |
tttacacctaaatctatttaatggatagaatgcatgtgctgttcaacatcctggtaaagaaaagaaactgataaaagaccaaagaattgattgatagttg |
36995014 |
T |
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| Q |
213 |
aagaaggtaagaatctaaaaac |
234 |
Q |
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| T |
36995013 |
aagaaggtaagaatctaaaaac |
36994992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 36989412 - 36989245
Alignment:
| Q |
73 |
cacgtgttctatatgatgtaacacgcatacctgaaaacaatttacacctaaatctatttaatggatagaatgcatgtgctgttcaacatcctg------g |
166 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||| | |
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| T |
36989412 |
cacgtgttctatatgatgtaacacgcgtacgtgaaaacaatttatacctaaatctatttaatggatagaatgcatttgctcttcaacatcctggagaaag |
36989313 |
T |
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| Q |
167 |
taaagaaaagaaactgataaaagaccaaagaattgattgatag-ttgaagaaggtaagaatctaaaaa |
233 |
Q |
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| T |
36989312 |
aaaagaaaagaaactcatacaaaacaaaagaatcgattgatagtttgaagaaggtaagaatctaaaaa |
36989245 |
T |
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