View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19429_low_2 (Length: 449)
Name: NF19429_low_2
Description: NF19429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19429_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 42326757 - 42327176
Alignment:
| Q |
19 |
acaaataccaattctaacaagtcataatttattaaaacaaaaaacaaactcctccatgcatgaacaacgaaaataagaagagaacaatactgaactagaa |
118 |
Q |
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| T |
42326757 |
acaaataccaattctaacaagtcataatttattaaaacaaaaaacaaactcgtccatgcatgaacaacgaaaataagaagagaacaatactgaactagaa |
42326856 |
T |
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| Q |
119 |
caatggcggtggcgcataacccaagaacggccttcct------cctcctccgtaagattcagagtaatggacggtatctttgaccttgtggaatccattc |
212 |
Q |
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| T |
42326857 |
caatggcggtggcgcataacccaagaacggccttcctcctcctcctcctccgtaagattcagagtaatggacggtatctttgaccttgtggaatccattc |
42326956 |
T |
|
| Q |
213 |
ttgaaaactccgaatccaaacagcattccgattgtgatcacaaccagaatcaagcatacgcataacatgcacactttgcccggacaacacatctttaatc |
312 |
Q |
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| T |
42326957 |
ttgaaaactccgaatccaaacagcattccgattgtgatcacaaccagaatcaagcatacgcataacatgcacactttgcccggacaacacatctttaatc |
42327056 |
T |
|
| Q |
313 |
aacgatcgtcgaagaaaaagagtttcaatannnnnnnncctcttggtatttctgatcttgtgaaaaaattgtgaagataatgtggtgaatttaaaagaaa |
412 |
Q |
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| T |
42327057 |
aacgatcgtcgaagaaaaagagtttcaata-attttttcctcttggtatttctgatcttgtgaaaaaattgtgaagataatgtggtgaatttaaaagaaa |
42327155 |
T |
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| Q |
413 |
atgaagaagttaacgttggtg |
433 |
Q |
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| T |
42327156 |
atgaagaaggtaacgttggtg |
42327176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 101 - 320
Target Start/End: Original strand, 42319458 - 42319674
Alignment:
| Q |
101 |
aacaatactgaactagaacaatggcggtggcgcataacccaagaacggccttcctcctcctccgtaagattcagagtaatggacggtatctttgaccttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||| ||||| |||||||| ||| |
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| T |
42319458 |
aacaatactgaactagaacaatggcggtggcgcataacccaagaacggccttcctccgcc---gtaagaatcagagtaatgaacggtgtctttgactttg |
42319554 |
T |
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| Q |
201 |
tggaatccattcttgaaaactccgaatccaaacagcattccgattgtgatcacaaccagaatcaagcatacgcataacatgcacactttgcccggacaac |
300 |
Q |
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| T |
42319555 |
tggaaaccattcttgaatactccgaatccaaacagaattccgatcgtgatcacaaccacaatcaagcatatgcataacgtgcagattttgcctggacaac |
42319654 |
T |
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| Q |
301 |
acatctttaatcaacgatcg |
320 |
Q |
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| T |
42319655 |
acatctcgaatgaacgatcg |
42319674 |
T |
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