View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19429_low_6 (Length: 363)
Name: NF19429_low_6
Description: NF19429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19429_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 57 - 347
Target Start/End: Complemental strand, 49756074 - 49755780
Alignment:
| Q |
57 |
tgtgtcagacgcgtgtacttgtcgcgtgcaaaacatgctttggattagaaattttgatcatgcaatatgtaaataataaataaat----ttggaaaaagg |
152 |
Q |
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| T |
49756074 |
tgtgtcagacgcgtgtacttgtcgcgtgcaaaacatgctttggattagaaattttgatcatgcaatatgtaaataataaataaataaatttggaaaaagg |
49755975 |
T |
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| Q |
153 |
atatgatggtcttgacaggattaaacttgtaatgaacaggggaagcagggcaagccaagtgatagatctgatcaacttcaagaagaataggttcaacaac |
252 |
Q |
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| T |
49755974 |
atatgatggtcttgacaggattaaacttgtaatgaacaggggaagcagggcaagccaagtgatagatctgatcaacttcaagaagaataggttcaacaac |
49755875 |
T |
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| Q |
253 |
atcatgtctaataagttcaaaattgggattaccaagatgatgaacaacgttctctttccttccagtaaaataattatcaatcacgatcacattat |
347 |
Q |
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| T |
49755874 |
atcatgtctaataagttcaaaattgggattaccaatatgatgaacaacattctctttccttccagtaaaataattatcaatcacgatcacattat |
49755780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 49756120 - 49756092
Alignment:
| Q |
18 |
agtaatttgggaaaaattatataatagaa |
46 |
Q |
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| T |
49756120 |
agtaatttgggaaaaattatataatagaa |
49756092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 145 - 309
Target Start/End: Original strand, 39567287 - 39567451
Alignment:
| Q |
145 |
gaaaaaggatatgatggtcttgacaggattaaacttgtaatgaacaggggaagcagggcaagccaagtgatagatctgatcaacttcaagaagaataggt |
244 |
Q |
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| T |
39567287 |
gaaaaaggatatgatagttttgacggggttgaacttgtaatgaacaggagaagcaggacaagcaagatgatagatctgatcaacttcaagaagaagaggc |
39567386 |
T |
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| Q |
245 |
tcaacaacatcatgtctaataagttcaaaattgggattaccaagatgatgaacaacgttctcttt |
309 |
Q |
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| T |
39567387 |
tcaacgacgtcgtgtcgaataagctcaaatctcggattaccaaaatgatgcataacgttctcttt |
39567451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 29127210 - 29127098
Alignment:
| Q |
146 |
aaaaaggatatgatggtcttgacaggattaaacttgtaatgaacaggggaagcagggcaagccaagtgatagatctgatcaacttcaagaagaataggtt |
245 |
Q |
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| T |
29127210 |
aaaaaggatatgattgtcttgatagggttatacttataatgaacaggtgaagcaggacaggcaagatgatagatctgatcaacctcaagcaaaatcggat |
29127111 |
T |
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| Q |
246 |
caacaacatcatg |
258 |
Q |
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| T |
29127110 |
caacaacatcatg |
29127098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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