View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1942_high_15 (Length: 215)
Name: NF1942_high_15
Description: NF1942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1942_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 29 - 204
Target Start/End: Complemental strand, 54136839 - 54136664
Alignment:
| Q |
29 |
aataaaatttcaaatacagcttctcataaagtagagttggattggatttctaatatctttgctctcatggattcagagggtgaataaattatagatttgg |
128 |
Q |
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| T |
54136839 |
aataaaatttcaaatacagcttctcataaagtagagttggattggctttctaatatctttgctctcatggattcacagggtgaataaattatagatttgg |
54136740 |
T |
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| Q |
129 |
atatttaagtcattaacatgagcatctgaactatcagttaaattactgttaaaatcttggtggttttcacaggttc |
204 |
Q |
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| T |
54136739 |
atatttaagtcattaacatgagcatctgaactatcagttaaattactgttaaaatcttggtggttttcataggttc |
54136664 |
T |
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