View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1942_high_3 (Length: 501)
Name: NF1942_high_3
Description: NF1942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1942_high_3 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0280 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 485
Target Start/End: Complemental strand, 9927 - 9455
Alignment:
| Q |
12 |
atgaacaacagtaatgaaagtagcagataaattttctaaaaacatgcatgaatttcacgaggaatcgaaaatgcacaatccttattcgatattcaataat |
111 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
9927 |
atgaacaacagtaatgaaagttgcagataaattttctaaaaacatgcatgaatttcacgaggaatcgaaaatggacaatccttattcaatattcaataac |
9828 |
T |
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| Q |
112 |
ccaaatttctgaaccctaacacaattatcacaacatatctatcataaaactataattcagtaaatttttcaaattggggccaagaatgatagaattacaa |
211 |
Q |
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| T |
9827 |
cccaatttctaaaccctaaaacaattatcacagcattcctatcccaaatccataactcagtgaatttt-caaattggggccaagaatgatagaattacaa |
9729 |
T |
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| Q |
212 |
tgtacctgctgagccgcaacgctacgattaggaaaatcataagtaggattagcataagtattatcaagataaacaacatcaacatcaccatcatgttcct |
311 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9728 |
tgtacctgctgagccgcaacgctacgagtaggaaaatcataagtaggattagcataagtattatcaagataaacaacatcaacatcaccatcatgttcct |
9629 |
T |
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| Q |
312 |
caagagcaacaccaagcatattttttgcaatccttgccttctcacaaccagcttcccaacgaaaatcaccagtataaagcacacaaccaaaatctccacg |
411 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9628 |
taagagcaacaccaagcatatttttggcaatccttgccttctcacaaccagcttcccaacgaaaatcaccagtataaagcacacaaccaaaatctccgcg |
9529 |
T |
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| Q |
412 |
aaaaagcaacataatcgaaccgatgccaaacactcacaacaaataacaaagtaaacgacatatcacaaatcaca |
485 |
Q |
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| T |
9528 |
gaaaagcaacataatcgaacctattccaaacactcacaacaaataacaaattaaacgacataactcaaatcaca |
9455 |
T |
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Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 92 - 471
Target Start/End: Complemental strand, 21910658 - 21910282
Alignment:
| Q |
92 |
cttattcgatattcaataatccaaatttctgaaccctaacacaattatcacaacatatctatcataaaactataattcagtaaatttttcaaattggggc |
191 |
Q |
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||||||||||||||| |||||| | |||| |||||||||||||||||||||| ||| |||||| ||| |||| ||| | ||| ||||||||| |||| |
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| T |
21910658 |
cttattcgatattcattaatcccattttccgaaccctaacacaattatcacagcatttctatcccaaattcataactcaatgaatgtttcaaattagggc |
21910559 |
T |
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| Q |
192 |
caagaatgatagaattacaatgtacctgctgagccgcaacgctacgattaggaaaatcataagtaggattagcataagtattatcaagataaacaacatc |
291 |
Q |
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|| |||||||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21910558 |
-aacaatgatagaattgcaatgtacctgttgagccgcaacgctacgactaggaaattcataagtaggattagcataagtattatcaaggcaaacaacatc |
21910460 |
T |
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| Q |
292 |
aacatcaccatcatgttcctcaagagcaacaccaagcatattttttgcaatccttgccttctcacaaccagcttcccaacgaaaatcaccagtataaagc |
391 |
Q |
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|||| ||||||||||||||| ||||||||||||||||| | | | |||||||||||||||||||||| | ||||||||||||||||||| |||| |||| |
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| T |
21910459 |
aacaacaccatcatgttcctttagagcaacaccaagcatttctctagcaatccttgccttctcacaactaccttcccaacgaaaatcaccggtatgaagc |
21910360 |
T |
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| Q |
392 |
acacaaccaaaatctccacgaaaaagcaacataatcgaaccgatgccaaacactcacaacaaataacaaagtaaacgaca |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||||||| |||||||| |
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| T |
21910359 |
tcacaaccaaaatctccacgaaaaagcaacataatcgaacctattccaaaaact--caacaaataacaaatcaaacgaca |
21910282 |
T |
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