View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1942_high_8 (Length: 424)

Name: NF1942_high_8
Description: NF1942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1942_high_8
NF1942_high_8
[»] chr6 (16 HSPs)
chr6 (105-421)||(8745451-8745767)
chr6 (105-421)||(1258161-1258480)
chr6 (105-421)||(2955959-2956275)
chr6 (105-417)||(1256737-1257057)
chr6 (105-418)||(8752516-8752837)
chr6 (105-204)||(8752003-8752102)
chr6 (164-229)||(1258120-1258185)
chr6 (318-421)||(19084057-19084160)
chr6 (164-229)||(8745743-8745808)
chr6 (164-229)||(8752078-8752143)
chr6 (164-224)||(1257038-1257098)
chr6 (164-223)||(8752475-8752534)
chr6 (300-373)||(19082733-19082806)
chr6 (164-212)||(1443635-1443683)
chr6 (164-229)||(2955918-2955983)
chr6 (164-212)||(1445026-1445074)
[»] chr4 (29 HSPs)
chr4 (105-421)||(54123269-54123585)
chr4 (105-369)||(10337892-10338156)
chr4 (105-417)||(32082355-32082669)
chr4 (105-417)||(42977221-42977534)
chr4 (105-417)||(48711881-48712193)
chr4 (105-421)||(10337123-10337445)
chr4 (105-403)||(54121864-54122170)
chr4 (105-417)||(42978635-42978955)
chr4 (164-421)||(48713245-48713502)
chr4 (105-362)||(16879236-16879500)
chr4 (286-362)||(16880394-16880470)
chr4 (300-421)||(19994517-19994638)
chr4 (300-421)||(19995973-19996094)
chr4 (300-421)||(44251624-44251745)
chr4 (300-421)||(44253111-44253232)
chr4 (164-229)||(42978594-42978659)
chr4 (293-341)||(42226630-42226678)
chr4 (300-417)||(55948872-55948989)
chr4 (164-229)||(54123228-54123293)
chr4 (318-373)||(53355167-53355222)
chr4 (164-229)||(10337421-10337486)
chr4 (164-229)||(54122146-54122211)
chr4 (300-417)||(18597655-18597772)
chr4 (318-421)||(55947379-55947482)
chr4 (164-229)||(10337851-10337916)
chr4 (164-233)||(16879472-16879541)
chr4 (192-267)||(33609153-33609228)
chr4 (164-234)||(32082314-32082384)
chr4 (164-229)||(48712169-48712234)
[»] chr5 (28 HSPs)
chr5 (105-417)||(39103135-39103447)
chr5 (105-373)||(39101782-39102050)
chr5 (105-373)||(36620954-36621218)
chr5 (105-421)||(8872539-8872854)
chr5 (136-373)||(36619612-36619849)
chr5 (105-421)||(8874000-8874314)
chr5 (157-362)||(5225384-5225589)
chr5 (154-421)||(38624735-38625002)
chr5 (157-341)||(5224827-5225010)
chr5 (154-373)||(11772473-11772692)
chr5 (300-421)||(1418855-1418976)
chr5 (300-421)||(30332302-30332423)
chr5 (304-421)||(30333930-30334047)
chr5 (241-339)||(12250471-12250567)
chr5 (164-229)||(8872830-8872895)
chr5 (164-229)||(36620913-36620978)
chr5 (164-229)||(39102026-39102091)
chr5 (300-417)||(25916197-25916314)
chr5 (164-224)||(36619852-36619912)
chr5 (165-233)||(5225041-5225109)
chr5 (318-373)||(17554940-17554995)
chr5 (164-229)||(8873959-8874024)
chr5 (164-224)||(39103094-39103154)
chr5 (154-248)||(12251130-12251224)
chr5 (154-191)||(17553284-17553321)
chr5 (300-369)||(25914561-25914630)
chr5 (318-373)||(1417477-1417533)
chr5 (227-275)||(28592242-28592290)
[»] chr1 (25 HSPs)
chr1 (105-418)||(41668295-41668608)
chr1 (105-421)||(19250878-19251202)
chr1 (156-373)||(19249387-19249602)
chr1 (154-341)||(10611592-10611782)
chr1 (300-421)||(28920574-28920695)
chr1 (300-419)||(7655183-7655302)
chr1 (303-421)||(36145363-36145481)
chr1 (300-421)||(16673175-16673296)
chr1 (300-421)||(28919102-28919223)
chr1 (303-421)||(7653705-7653823)
chr1 (168-229)||(19250733-19250794)
chr1 (154-221)||(19250826-19250894)
chr1 (318-421)||(33259309-33259412)
chr1 (318-421)||(33279468-33279571)
chr1 (300-421)||(33257900-33258020)
chr1 (300-421)||(33278072-33278192)
chr1 (300-418)||(19057786-19057904)
chr1 (164-212)||(33983215-33983263)
chr1 (300-421)||(36146831-36146951)
chr1 (300-373)||(16672722-16672795)
chr1 (164-229)||(41668584-41668649)
chr1 (164-212)||(24437293-24437341)
chr1 (164-209)||(24438740-24438785)
chr1 (300-373)||(50316969-50317042)
chr1 (381-421)||(16592040-16592080)
[»] chr2 (14 HSPs)
chr2 (154-421)||(28563395-28563662)
chr2 (154-421)||(45499324-45499591)
chr2 (154-421)||(40303312-40303579)
chr2 (300-421)||(1841674-1841795)
chr2 (300-421)||(13947767-13947887)
chr2 (300-421)||(14088956-14089076)
chr2 (318-421)||(1840176-1840279)
chr2 (164-212)||(16142444-16142492)
chr2 (164-216)||(38728398-38728450)
chr2 (192-372)||(44097162-44097342)
chr2 (318-421)||(40304699-40304802)
chr2 (318-421)||(45492969-45493072)
chr2 (318-421)||(45500711-45500814)
chr2 (392-424)||(44421353-44421385)
[»] chr7 (30 HSPs)
chr7 (154-421)||(46245141-46245408)
chr7 (214-372)||(30792663-30792821)
chr7 (154-336)||(30791352-30791534)
chr7 (226-370)||(9532459-9532603)
chr7 (300-421)||(40028476-40028597)
chr7 (300-421)||(40029948-40030069)
chr7 (300-421)||(45277886-45278007)
chr7 (154-372)||(15135446-15135664)
chr7 (300-419)||(21716538-21716657)
chr7 (247-421)||(21914510-21914678)
chr7 (154-256)||(37132019-37132121)
chr7 (300-419)||(45276430-45276549)
chr7 (300-421)||(8231553-8231674)
chr7 (300-421)||(31392077-31392198)
chr7 (300-421)||(31393578-31393699)
chr7 (154-229)||(31734528-31734603)
chr7 (300-421)||(8230089-8230210)
chr7 (300-421)||(21715091-21715212)
chr7 (299-373)||(14774579-14774653)
chr7 (299-373)||(15225032-15225106)
chr7 (168-234)||(30791562-30791628)
chr7 (300-421)||(4675716-4675836)
chr7 (301-421)||(12180559-12180679)
chr7 (154-191)||(14780668-14780705)
chr7 (154-191)||(15230687-15230724)
chr7 (300-373)||(32881183-32881256)
chr7 (194-265)||(11670016-11670087)
chr7 (318-421)||(46246512-46246615)
chr7 (154-199)||(11747627-11747672)
chr7 (164-212)||(12180432-12180480)
[»] chr3 (15 HSPs)
chr3 (235-373)||(31657021-31657159)
chr3 (154-421)||(40499025-40499292)
chr3 (154-421)||(31796607-31796874)
chr3 (154-373)||(41083044-41083262)
chr3 (154-373)||(48568303-48568522)
chr3 (105-199)||(31657163-31657265)
chr3 (300-421)||(53527989-53528110)
chr3 (318-421)||(53529471-53529574)
chr3 (165-229)||(31657241-31657305)
chr3 (300-421)||(33732984-33733105)
chr3 (300-421)||(33734421-33734542)
chr3 (169-249)||(32559111-32559191)
chr3 (193-265)||(41881465-41881537)
chr3 (153-265)||(44458771-44458883)
chr3 (318-421)||(41081821-41081924)
[»] chr8 (8 HSPs)
chr8 (105-357)||(31917062-31917322)
chr8 (300-418)||(25265824-25265942)
chr8 (300-421)||(25264359-25264480)
chr8 (300-418)||(33295365-33295482)
chr8 (184-371)||(41912540-41912727)
chr8 (300-373)||(33294007-33294080)
chr8 (164-229)||(31917298-31917363)
chr8 (164-211)||(21128081-21128129)
[»] scaffold0633 (1 HSPs)
scaffold0633 (313-418)||(6826-6931)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 105 - 421
Target Start/End: Complemental strand, 8745767 - 8745451
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||    
T  8745767 ggtccctgtaatatagtcagggatcttctggaaggccacctaaatttcatatttaggtgattttaatttcgtccctctgtaccttttcgtttttggtttt 8745668  T
Q  205 ggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtt 304  Q
    |||||||| ||||||||||| |||||||  ||||||||||||||||||||||||||||| ||||| |||||  |||||||||||||||||||||||||||    
T  8745667 ggtccctgtaatatagtcagggatcatccgtcagtccacataagcgtgtttggccaagttagcacctgccacatcactcaccgttagccagcaaggcgtt 8745568  T
Q  305 tttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaac 404  Q
    ||||||| |||||||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||       |||||||||| |||||| ||||||    
T  8745567 tttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacgggggttgttttagaacaaaaaaagatatagggacgaaaaccaaaaac 8745468  T
Q  405 acgccaaattacaggga 421  Q
    |||||||||||||||||    
T  8745467 acgccaaattacaggga 8745451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 105 - 421
Target Start/End: Original strand, 1258161 - 1258480
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    |||||||||||||||||||| ||||||  |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||    
T  1258161 ggtccctgtaatatagtcagtgatcttttggaaggccacctaaatttcatatttaggtgtttttaatttcgtccctctgtaccttttcgtttttggcttt 1258260  T
Q  205 ggtccctgcaatata--gtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcg 302  Q
    |||||||| |||||   ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| ||||||    
T  1258261 ggtccctgtaatatgaggtcagggatcatctgtcagtccacataagcgtgtttggccaagtcagcacctgccacgtcactcaccgttagtcaggaaggcg 1258360  T
Q  303 tttttgtaatagagtttgacgggagggacgaaaagc-aaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaa 401  Q
    ||||||||| |||||||||||||||||||||||||| ||| | |||||||| || ||||||| |||||||||       |||| ||||| |||||| |||    
T  1258361 tttttgtaacagagtttgacgggagggacgaaaagcaaaaagtttattaacctataggggttgttttagaacaaaaaaagatacagggacgaaaaccaaa 1258460  T
Q  402 aacacgccaaattacaggga 421  Q
    ||||||||||||||||||||    
T  1258461 aacacgccaaattacaggga 1258480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 105 - 421
Target Start/End: Original strand, 2955959 - 2956275
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    ||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||||    
T  2955959 ggtccatgtaatatagtcagggatcttctggaaggccacctaaatttcatatttatgtgtttttaatttcgtccctctgtacctttttgtttttggtttt 2956058  T
Q  205 ggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtt 304  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||| | |||| ||| ||||||||    
T  2956059 ggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggccaagtcagcacctgccacgtcactcatctttagtcagtaaggcgtt 2956158  T
Q  305 tttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaac 404  Q
    ||||||| |||||||||||||||||||||||||||||  ||||||||||||| || ||| |||||||||       |||| | ||| |||||| ||||||    
T  2956159 tttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacgggagttgttttagaacaaaaaaagatacaaggacgaaaaccaaaaac 2956258  T
Q  405 acgccaaattacaggga 421  Q
    ||  |||||||||||||    
T  2956259 acatcaaattacaggga 2956275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 105 - 417
Target Start/End: Complemental strand, 1257057 - 1256737
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatattt--------aggtgtttttaatttcgtccctctataccttttcgttt 196  Q
    ||||||||||||||||||||| |||||| |||||||| ||||||||||||||||        ||||||||||||||| |||||||| |||||||||||||    
T  1257057 ggtccctgtaatatagtcaggaatcttctggaaggccacctaaatttcatattttgttatttaggtgtttttaattttgtccctctgtaccttttcgttt 1256958  T
Q  197 ttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagc 296  Q
    ||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  1256957 ttggttttggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggccaagtcagcacctgccacgtcactcaccgttagtcagc 1256858  T
Q  297 aaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaa 396  Q
    ||||| ||||||||| ||||||||||||||||||||||||| |||  |||||||||||| ||||||| ||||||||        |||| ||||| |||||    
T  1256857 aaggcatttttgtaacagagtttgacgggagggacgaaaagtaaaaagttattaacttataggggttgttttagaataaaaaaagatacagggacgaaaa 1256758  T
Q  397 caaaaaacacgccaaattaca 417  Q
    | |||||||||||||||||||    
T  1256757 ccaaaaacacgccaaattaca 1256737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 105 - 418
Target Start/End: Original strand, 8752516 - 8752837
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatt--------taggtgtttttaatttcgtccctctataccttttcgttt 196  Q
    ||||| ||||||||||||| |||||||  |||||||  |||||||||||||||        |||||||||||||||| |||||||| ||| |||||||||    
T  8752516 ggtccttgtaatatagtcaaggatcttttggaaggcaacctaaatttcatattttgttatttaggtgtttttaattttgtccctctgtactttttcgttt 8752615  T
Q  197 ttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagc 296  Q
    ||| |||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||  ||||| ||||||||||||||||||||    
T  8752616 ttggttttggtccctgtaatatagtcagggatcatctgtcagtccacataaacgtgtttggccaagtcagcatctgccacgtcactcaccgttagccagc 8752715  T
Q  297 aaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaa 396  Q
    ||| ||||||||||| | ||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||       |||| ||||| |||||    
T  8752716 aagacgtttttgtaacaaagtttgacgggagggacgaaaagcaaaaggttattaacttgcaggggttgttttagaacaaaaaaagatacagggacgaaaa 8752815  T
Q  397 caaaaaacacgccaaattacag 418  Q
    | ||||||||||||||||||||    
T  8752816 ccaaaaacacgccaaattacag 8752837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 8752102 - 8752003
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||    
T  8752102 ggtccctgtaatatagtcagggatcttctggaaggccacctaaatttcatatttaggtgattttaatttcgtccctctgtaccttttcgtttttggtttt 8752003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 1258120 - 1258185
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| ||| || ||||||||||||| |||||||||||| ||||||||||||||||    
T  1258120 tttttaatttcgtccttctgtaacttttcgtttttggttttggtccctgtaatatagtcagtgatc 1258185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 19084057 - 19084160
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattaca 417  Q
    ||||||||||||||||||| ||||  ||||||||| |||||||||| |||||||||       |||| |||||  ||||| |||||||||| ||||||||    
T  19084057 ttgacgggagggacgaaaatcaaaaagttattaacatacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaaaacacgctaaattaca 19084156  T
Q  418 ggga 421  Q
    ||||    
T  19084157 ggga 19084160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 8745808 - 8745743
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| ||| || ||||||||||||| |||||||||||| ||||||||||| ||||    
T  8745808 tttttaatttcgtccttctgtaacttttcgtttttggttttggtccctgtaatatagtcagggatc 8745743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 8752143 - 8752078
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| ||| || ||||||||||||| |||||||||||| ||||||||||| ||||    
T  8752143 tttttaatttcgtccttctgtaacttttcgtttttggttttggtccctgtaatatagtcagggatc 8752078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 1257098 - 1257038
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcag 224  Q
    ||||||||||||||| ||| || ||||||||||||  |||||||||||| |||||||||||    
T  1257098 tttttaatttcgtccttctgtaacttttcgttttttgttttggtccctgtaatatagtcag 1257038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 8752475 - 8752534
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtca 223  Q
    ||||||||||||||| ||| || ||||||||||||| ||||||||| || ||||||||||    
T  8752475 tttttaatttcgtccttctgtaacttttcgtttttggttttggtccttgtaatatagtca 8752534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 19082806 - 19082733
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaac 373  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||| | ||||| |||||||||    
T  19082806 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatatgggttgttttagaac 19082733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 1443683 - 1443635
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctg 212  Q
    ||||||||||||||||| | ||  |||||||||||||||||||||||||    
T  1443683 tttttaatttcgtccctatgtaatttttcgtttttgattttggtccctg 1443635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 2955918 - 2955983
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||  | | || ||||||||||||| ||||||||| || ||||||||||| ||||    
T  2955918 tttttaatttcgtcattatgtaacttttcgtttttggttttggtccatgtaatatagtcagggatc 2955983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 1445026 - 1445074
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctg 212  Q
    |||| |||||||||||||| ||  |||||||||||||||||| ||||||    
T  1445026 ttttgaatttcgtccctctgtaatttttcgtttttgattttgatccctg 1445074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 105 - 421
Target Start/End: Original strand, 54123269 - 54123585
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  54123269 ggtccctgtaatatagtcagggatcttctggaaggccacctaaatttcatatttaggtgtttttaatttcgtccctctgtaccttttcgtttttggtttt 54123368  T
Q  205 ggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtt 304  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  54123369 ggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggccaagtcagcacctgccacgtcactcaccgttagccagcaaggcgtt 54123468  T
Q  305 tttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaac 404  Q
    ||||| | |||||||||||||||||||||||||||||  |||||||||||||||| ||| |||||||||        ||| ||||| |||||| ||||||    
T  54123469 tttgttacagagtttgacgggagggacgaaaagcaaaaagttattaacttacaggagttgttttagaacaaaaaaatatacagggacgaaaaccaaaaac 54123568  T
Q  405 acgccaaattacaggga 421  Q
    | |||||||||||||||    
T  54123569 atgccaaattacaggga 54123585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 105 - 369
Target Start/End: Original strand, 10337892 - 10338156
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    |||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  10337892 ggtccctgtaatatagtcagggatcttctggaaggccacctaattttcatatttaggtgtttttaatttcgtccctctgtaccttttcgtttttggtttt 10337991  T
Q  205 ggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtt 304  Q
    | |||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  10337992 gatccctgtaatatagtcagggatcatctgtcagttcacataagcgtgtttggccaagtcagcacctgccatgtaactcaccgttagctagcaaggcgtt 10338091  T
Q  305 tttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttatttta 369  Q
    ||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||| |||||    
T  10338092 tttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttacaggggttgtttta 10338156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 105 - 417
Target Start/End: Original strand, 32082355 - 32082669
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    ||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  32082355 ggtccctgtaatatagtcagggatcttctagaaggccacctaaatttcatatttaggtgtttttaatttcgtccctctgtaccttttcgtttttggtttt 32082454  T
Q  205 ggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactca--ccgttagccagcaaggcg 302  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| || ||  | |||||    |||||||| |||||||    
T  32082455 ggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttagccaagtcagcacgtgtcacattactcatgttgttagccaacaaggcg 32082554  T
Q  303 tttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaa 402  Q
    ||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||       |||| ||||| |||||| ||||    
T  32082555 tttttgtaacagagtttgacaggagggacgaaaagcaaaaagttattaacttacaggggttattttagaacaaaaaaagatacagggacgaaaaccaaaa 32082654  T
Q  403 acacgccaaattaca 417  Q
    |||||||||||||||    
T  32082655 acacgccaaattaca 32082669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 105 - 417
Target Start/End: Complemental strand, 42977534 - 42977221
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    ||||||| ||||||||||| ||||||||  ||||||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||    
T  42977534 ggtccctataatatagtcatggatcttctagaaggccacctaaattttatatttatgtgtttttaatttcgtccctctgtaccttttcgtttttggtttt 42977435  T
Q  205 -ggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgt 303  Q
     |||||||| |||| |||||  |||||||| |||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||    
T  42977434 tggtccctgtaatagagtcaaggatcatctgtcagtccacataagcgtgtttgaccaagtcagcacctgccaagtcactcaccgttagccagcaaggcgt 42977335  T
Q  304 ttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaa 403  Q
    |||||||| |||||||||||||||||||||||||||||  |||||||||||| | ||||| |||||||||       |||| ||||| |||||| |||||    
T  42977334 ttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttaaatgggttgttttagaacaaaaaaagatacagggacgaaaaccaaaaa 42977235  T
Q  404 cacgccaaattaca 417  Q
    ||||||||||||||    
T  42977234 cacgccaaattaca 42977221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 105 - 417
Target Start/End: Complemental strand, 48712193 - 48711881
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    ||||| |||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||  ||||    
T  48712193 ggtccatgtaatctagtcagggatcttctggaaggccacctaaatttcatatttaggtgtttttaatttcgtccctatgtaccttttcatttttagtttt 48712094  T
Q  205 ggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtt 304  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||| |||||||||    
T  48712093 ggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggtcaagtcagcacttgccacgtcactcactgttagccaacaaggcgtt 48711994  T
Q  305 tttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaac 404  Q
    |||||||  ||||||||||||| ||||||||| ||||  ||||| ||||| ||||||||||||||||||       |||| | ||| |||||||||||||    
T  48711993 tttgtaaccgagtttgacgggaaggacgaaaatcaaaatgttatcaacttgcaggggttattttagaacaaaaaaagatacaaggacgaaaacaaaaaac 48711894  T
Q  405 acgccaaattaca 417  Q
    |||| ||||||||    
T  48711893 acgcaaaattaca 48711881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 105 - 421
Target Start/End: Complemental strand, 10337445 - 10337123
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatattt--------aggtgtttttaatttcgtccctctataccttttcgttt 196  Q
    |||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||        ||||||||||||||| |||| |||||||||||||||||    
T  10337445 ggtcactgtaatatagtcagagatcttctggaaggccacctaaatttcatattttgttatttaggtgtttttaattttgtcc-tctataccttttcgttt 10337347  T
Q  197 ttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagc 296  Q
    ||| |||||||||||  ||||||||||| |||||||| ||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |    
T  10337346 ttggttttggtccctataatatagtcagggatcatctgtcattccacataaacgtgtttggccaagtcagcacctgccacgtcactcaccgttagcca-c 10337248  T
Q  297 aaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaa 396  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||       |||| | ||| |||||    
T  10337247 aaggcgtctttgtaacagagtttgacgggagggatgaaaagcaaaaggttattaacttacaggggttgttttagaacaaaaaaagatacaaggacgaaaa 10337148  T
Q  397 caaaaaacacgccaaattacaggga 421  Q
    | |||||||||||||||||||||||    
T  10337147 ccaaaaacacgccaaattacaggga 10337123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 105 - 403
Target Start/End: Complemental strand, 54122170 - 54121864
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttca--------tatttaggtgtttttaatttcgtccctctataccttttcgttt 196  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||        |||||||||||||||||||| |||||| | |||||||||||||    
T  54122170 ggtccctgtaatatagtcagggatcttctggaaggccacctaaatttcaaattttattatttaggtgtttttaattttgtccctatgtaccttttcgttt 54122071  T
Q  197 ttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagc 296  Q
    | | |||||||||||| |||||||||||  ||||||| ||| |||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||||    
T  54122070 tcggttttggtccctgtaatatagtcaggaatcatctgtcaatccacataagtgtgtttggccaagtcagcacctgccacgtcactcaccgttagtcagc 54121971  T
Q  297 aaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaa 396  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||  |||||||||||||||||||| |||||||||       |||| ||||| |||||    
T  54121970 aaggcgtttttgtaacagagtttaacgggagggacgaaaagcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaa 54121871  T
Q  397 caaaaaa 403  Q
    |||||||    
T  54121870 caaaaaa 54121864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 105 - 417
Target Start/End: Original strand, 42978635 - 42978955
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatt--------taggtgtttttaatttcgtccctctataccttttcgttt 196  Q
    |||||||||||||||||||||||||||| |||||||| |||| ||||||||||        |||||||||||||||| |||| ||| |||||||||||||    
T  42978635 ggtccctgtaatatagtcagggatcttctggaaggccacctacatttcatattttgttatttaggtgtttttaattttgtccatctgtaccttttcgttt 42978734  T
Q  197 ttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagc 296  Q
     || |||||||||||  ||||||| ||  |||||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  42978735 ctggttttggtccctataatatagacaaggatcatctgtcagtccacataagcgtgtttgaccaagtcagcacctgccaagtcactcaccgttagccagc 42978834  T
Q  297 aaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaa 396  Q
    ||||||||||||||| |||||||||||||||||||||||||||||   ||||||||||||| || || |||||||||       |||| ||||| |||||    
T  42978835 aaggcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaaattattaacttacaaggattgttttagaacaaaaaaagatacagggacgaaaa 42978934  T
Q  397 caaaaaacacgccaaattaca 417  Q
    | |||||||||||||||||||    
T  42978935 ccaaaaacacgccaaattaca 42978955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 164 - 421
Target Start/End: Original strand, 48713245 - 48713502
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagt 263  Q
    ||||||||||||||| ||| || ||||||||||||  |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  48713245 tttttaatttcgtccttctgtaacttttcgtttttagttttggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggccaagt 48713344  T
Q  264 cagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggtt 363  Q
    |||||| ||| | ||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  48713345 cagcacctgctacgtcactcaccgttagtcagcaaggcgtttttgtaacagagtttgactggagggacgaaaagcaaaaggttattaacttacaggggtt 48713444  T
Q  364 attttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattacaggga 421  Q
     |||||||||       |||| ||||| |||||| |||||||||||||||||||||||    
T  48713445 gttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattacaggga 48713502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 105 - 362
Target Start/End: Complemental strand, 16879500 - 16879236
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttca--------tatttaggtgtttttaatttcgtccctctataccttttcgttt 196  Q
    |||| |||||||||||||||||| | || |||||||| |||||||||||        |||||||||||||| ||||||||||||  ||||||||| || |    
T  16879500 ggtctctgtaatatagtcagggaccatctggaaggccacctaaatttcaaattttgttatttaggtgtttt-aatttcgtccctagatacctttttgtct 16879402  T
Q  197 ttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagc 296  Q
    ||| |||||||||||  |||||||| || ||  |||||   ||||||| ||||||||||  ||||| ||||||  |||| ||||| | ||||||||||||    
T  16879401 ttggttttggtccctataatatagtaagggaaaatctacaggtccacaaaagcgtgtttaaccaagccagcacccgccacgtcacacgccgttagccagc 16879302  T
Q  297 aaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggt 362  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||| ||||    
T  16879301 aaggcgtttttgtaacagattttgacgggagggacgaaaagcaaaaggttattaccttacaagggt 16879236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 286 - 362
Target Start/End: Original strand, 16880394 - 16880470
Alignment:
Q  286 cgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggt 362  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||  |||||||||||||| ||||    
T  16880394 cgttagccaccaaggcgtttttgtaacagagtttgacgggagggacgataagcaaaaagttattaacttacaagggt 16880470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 19994638 - 19994517
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||| ||||||| |||||||||       |||| ||||| |||||| |    
T  19994638 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacca 19994539  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  19994538 aaaacacgccaaattacaggga 19994517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 19995973 - 19996094
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  |||| |||||||||||||| ||||  |||||||||||||||||||| |||||||||       |||| |||||  ||||| |    
T  19995973 gcgtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggaccaaaacca 19996072  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  19996073 aaaacacgccaaattacaggga 19996094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 44251745 - 44251624
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||||| ||||| |||||||||       |||| | ||| |||||| |    
T  44251745 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaagggttgttttagaacaaaaaaagatacaaggacgaaaacca 44251646  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  44251645 aaaacacgccaaattacaggga 44251624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 44253111 - 44253232
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  |||||||||| |||||||| ||||  |||||||||||| ||||||| |||||||||       |||||||||| |||||| |    
T  44253111 gcgtttttgtaacggaagttgacgggagagacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatatagggacgaaaacca 44253210  T
Q  400 aaaacacgccaaattacaggga 421  Q
    |||||||||||||||| |||||    
T  44253211 aaaacacgccaaattaaaggga 44253232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 42978594 - 42978659
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| ||| |||||||||||||||| |||||||||||| ||||||||||| ||||    
T  42978594 tttttaatttcgtccttctgtaccttttcgtttttggttttggtccctgtaatatagtcagggatc 42978659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 42226630 - 42226678
Alignment:
Q  293 cagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaa 341  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42226630 cagcaaggcgtttttgtaatagagattgacgggagggacgaaaagcaaa 42226678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 417
Target Start/End: Original strand, 55948872 - 55948989
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||| ||||| | ||  |||||||||||||||||||| |||||||||       |||| ||||| |||||| |    
T  55948872 gcgtttttgtaacggaagttgacgggagggaagaaaatccaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaacca 55948971  T
Q  400 aaaacacgccaaattaca 417  Q
    ||||||||||||||||||    
T  55948972 aaaacacgccaaattaca 55948989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 54123228 - 54123293
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| ||| || ||||||||||||| |||||||||||| ||||||||||| ||||    
T  54123228 tttttaatttcgtccttctgtaacttttcgtttttggttttggtccctgtaatatagtcagggatc 54123293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 53355222 - 53355167
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaac 373  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||| |||||||||    
T  53355222 ttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaac 53355167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 10337486 - 10337421
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| ||| || ||||||||||||| |||||||| ||| ||||||||||| ||||    
T  10337486 tttttaatttcgtccttctgtaacttttcgtttttggttttggtcactgtaatatagtcagagatc 10337421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 54122211 - 54122146
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| | | || ||||||||||||| |||||||||||| ||||||||||| ||||    
T  54122211 tttttaatttcgtccttatgtaacttttcgtttttggttttggtccctgtaatatagtcagggatc 54122146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 417
Target Start/End: Complemental strand, 18597772 - 18597655
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  ||||||||||||| | |||| ||||||||        |||| ||||| |||||| |    
T  18597772 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacggaggttgttttagaataaaaaaagatacagggacgaaaacca 18597673  T
Q  400 aaaacacgccaaattaca 417  Q
    |||||||| |||||||||    
T  18597672 aaaacacggcaaattaca 18597655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 421
Target Start/End: Complemental strand, 55947482 - 55947379
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattaca 417  Q
    ||||||||||||||||||| ||||  |||||||||||| ||||| | ||||| |||       |||| ||||| |||||| ||||| ||| |||||||||    
T  55947482 ttgacgggagggacgaaaatcaaaaagttattaacttataggggctgttttataacaaaaaaagatacagggacgaaaaccaaaaatacgtcaaattaca 55947383  T
Q  418 ggga 421  Q
    ||||    
T  55947382 ggga 55947379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 10337851 - 10337916
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| | | || ||||||||||||  |||||||||||| ||||||||||| ||||    
T  10337851 tttttaatttcgtccttttgtaacttttcgttttttgttttggtccctgtaatatagtcagggatc 10337916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 16879541 - 16879472
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatct 233  Q
    ||||||||||||||||||  || ||||| ||||||| |||||||| ||| ||||||||||| || |||||    
T  16879541 tttttaatttcgtccctcgctaacttttagtttttggttttggtctctgtaatatagtcagggaccatct 16879472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 33609153 - 33609228
Alignment:
Q  192 cgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagc 267  Q
    |||||||| |||||||||||  ||| |||||| | || |||| ||||| ||||||||||||||| |||| ||||||    
T  33609153 cgtttttggttttggtccctcaaatctagtcacttatgatctgtcagtacacataagcgtgttttgccatgtcagc 33609228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 32082314 - 32082384
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatcta 234  Q
    ||||||||||| | | ||| || ||||||||||||| || ||||||||| ||||||||||| |||| ||||    
T  32082314 tttttaatttctttcttctgtaacttttcgtttttggttctggtccctgtaatatagtcagggatcttcta 32082384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 48712234 - 48712169
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| ||| ||  |||||||||||| ||||||||| || ||| ||||||| ||||    
T  48712234 tttttaatttcgtccttctgtaatttttcgtttttggttttggtccatgtaatctagtcagggatc 48712169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 105 - 417
Target Start/End: Original strand, 39103135 - 39103447
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    ||||||||||||||||||||| |||||| |||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  39103135 ggtccctgtaatatagtcaggaatcttctggaaggccacataaatttcatatttaggtgtttttaatttcgtccctctgtaccttttcgtttttggtttt 39103234  T
Q  205 ggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtt 304  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  39103235 ggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggccaagtcagcacctgccacgtcactcaccgttagccagcaaggcgtt 39103334  T
Q  305 tttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaac 404  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||| | ||||| |||||||||       ||||  || | |||||| ||||||    
T  39103335 tttgtaatagagtttgacgggagggacgaaacgcaaaaagttattaacttatacgggttgttttagaacaaaaaaagatactggaacgaaaaccaaaaac 39103434  T
Q  405 acgccaaattaca 417  Q
    |||||||||||||    
T  39103435 acgccaaattaca 39103447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 105 - 373
Target Start/End: Complemental strand, 39102050 - 39101782
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  39102050 ggtccctgtaatatagtcagggatcttctggaaggccacctaaatttcatatttaggtgtttttaatttcgtccctctgtaccttttcgtttttggtttt 39101951  T
Q  205 ggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtt 304  Q
     |||| || ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  39101950 agtccttgtaatatagtcagggatcatctgtcagtctacataagcgtgtttggccaagtcagcacctgccacgtcactcaccgttagccagcaaggcgtt 39101851  T
Q  305 tttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaac 373  Q
    ||||||| |||||||||||||||||||||||||||||  ||||||||| |||||||||| |||||||||    
T  39101850 tttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacatacaggggttgttttagaac 39101782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 105 - 373
Target Start/End: Original strand, 36620954 - 36621218
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36620954 ggtccctgtaatatagtcagggatcttctggaaggccacctaaatttcatatttaggtgtttttaatttcgtccctctgtaccttttcgtttttgatttt 36621053  T
Q  205 ggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtt 304  Q
    |||||||| ||||||||||| ||||     | |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  36621054 ggtccctgtaatatagtcagggatc----gttagtctacataagcgtgtttggccaagtcagcacctgccacgtcactcaccgttagccagcaaggcgtt 36621149  T
Q  305 tttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaac 373  Q
    ||||||| |||||||||||||||||||||||||||||  ||||||||  |||| ||||| |||||||||    
T  36621150 tttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaatgtacaagggttgttttagaac 36621218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 105 - 421
Target Start/End: Complemental strand, 8872854 - 8872539
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||| | ||||||  |||||||| ||||||| ||||    
T  8872854 ggtccctgtaatatagtcagggatcttctgaaaggccacctaaatttcatatttaggtgtttttaattccttccctccgtacctttttgtttttggtttt 8872755  T
Q  205 ggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtt 304  Q
    |||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||||| ||||| |||||  |||||||||||||| ||||||||||||    
T  8872754 ggtccctgtaatatagtcagggatcatctgtcagtccacgtaagcgtgtttggccaagttagcacctgccacatcactcaccgttagtcagcaaggcgtt 8872655  T
Q  305 tttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaac 404  Q
    ||||||| ||||||||||||| |||||||||||||||  ||||||||||||  |||||| |||||||||       |||| ||| | |||||| ||||||    
T  8872654 tttgtaacagagtttgacggg-gggacgaaaagcaaaaagttattaacttatgggggttgttttagaacaaaaaaagatacaggaacgaaaaccaaaaac 8872556  T
Q  405 acgccaaattacaggga 421  Q
    |||||||||||||||||    
T  8872555 acgccaaattacaggga 8872539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 136 - 373
Target Start/End: Complemental strand, 36619849 - 36619612
Alignment:
Q  136 aaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctat 235  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||| |||| ||| |    
T  36619849 aaggccacctaaatttcatatttaggtgtttttaatttcgtccctctttacctttttgtttttggttttggtccctgtaatatagtcagggatcgtctgt 36619750  T
Q  236 cagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaa 335  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  36619749 cagtccacataagcgtgtttggccaagtcagcacctgccacgtcactcaccgttagccagcaaggcatttttgtaacagagtttgacgggagggacgaaa 36619650  T
Q  336 agcaaatggttattaacttacaggggttattttagaac 373  Q
    ||||||  | |||||||||| ||||||| |||||||||    
T  36619649 agcaaaaagctattaacttataggggttgttttagaac 36619612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 105 - 421
Target Start/End: Original strand, 8874000 - 8874314
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatattt--------aggtgtttttaatttcgtccctctataccttttcgttt 196  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||        ||||||||||||||    |||||| |||||||||||||    
T  8874000 ggtccctgtaatatagtcagggatcttctggaaggccacctaaatttcatattttgttattcaggtgtttttaatt----ccctctgtaccttttcgttt 8874095  T
Q  197 ttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagc 296  Q
    ||      |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||||||||    
T  8874096 tt------ggtccctgtaatatagtcagggatcatctatcagtccacataagcgtgtttggcaaaatcagcacctgccacgtcactcaccgttagccagc 8874189  T
Q  297 aaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaa 396  Q
    ||| | ||||||||| ||||||||||| ||||||| |||||||||  |||||||||||||||||||| |||||||||        ||| ||||| |||||    
T  8874190 aagacatttttgtaacagagtttgacgagagggacaaaaagcaaaaagttattaacttacaggggttgttttagaacaaaaaaatatacagggacgaaaa 8874289  T
Q  397 caaaaaacacgccaaattacaggga 421  Q
    | ||||||| | |||||||||||||    
T  8874290 ccaaaaacaggtcaaattacaggga 8874314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 157 - 362
Target Start/End: Original strand, 5225384 - 5225589
Alignment:
Q  157 ttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttg 256  Q
    |||||||||||||||||| ||||| | |||||||| ||||||||||||||||| || ||| ||||||| |||||||| ||||||||||||| |||||||     
T  5225384 ttaggtgtttttaatttcatccctatgtacctttttgtttttgattttggtccttgtaatttagtcagggatcatctgtcagtccacataaacgtgttta 5225483  T
Q  257 gccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttac 356  Q
    |||||||||||||  |||||||||| || ||||||  | |||| ||||||||||| ||||||||||  ||||| |||||||||||   ||||||||||||    
T  5225484 gccaagtcagcacccgccatgtcacacatcgttagatatcaagacgtttttgtaacagagtttgacaagaggggcgaaaagcaaagacttattaacttac 5225583  T
Q  357 aggggt 362  Q
    | ||||    
T  5225584 atgggt 5225589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 154 - 421
Target Start/End: Complemental strand, 38625002 - 38624735
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||| |||||||| |||   ||||||||||| |    
T  38625002 tatttaggtgtttttaatttcgtccctatgtaccttttcgtttttggttttggtccctgtaatatagtcagagatcatctgtcacgacacataagcgttt 38624903  T
Q  254 ttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaact 353  Q
    || ||||  ||| |  ||||||  |||  | ||||||| |||| ||||||||||||||  ||  ||||||||||||||||||| ||||  ||||||||||    
T  38624902 tttgccacatcatcctttgccacatcagccgccgttagacagcgaggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaact 38624803  T
Q  354 tacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattacaggga 421  Q
    || ||||||| |||||||||       ||||  |||| |||||| |||||||||| || |||||||||    
T  38624802 tataggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaacttacaggga 38624735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 157 - 341
Target Start/End: Complemental strand, 5225010 - 5224827
Alignment:
Q  157 ttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttg 256  Q
    |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||  |||||||| | |||||||||||||||||||     
T  5225010 ttaggtgtttttaatttcgtccctctgtaccttttagtttttggttttggtccctgtaatatagtcatggatcatctgttagtccacataagcgtgttta 5224911  T
Q  257 gccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaa 341  Q
    ||||||| ||||| | ||| |||||    |  ||||| ||||| ||||||| ||| | |||||||||||| | ||||||||||||    
T  5224910 gccaagttagcacctcccacgtcacatgtcagtagcctgcaagacgttttt-taacaaagtttgacgggatgtacgaaaagcaaa 5224827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 373
Target Start/End: Original strand, 11772473 - 11772692
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||| |||||||||||| ||||||||||| |||||||| |||   ||||||||||| |    
T  11772473 tatttaggtgtttttaatttcgtgcctatgtaccttttcgtttttggttttggtccctgtaatatagtcagggatcatctgtcacgacacataagcgttt 11772572  T
Q  254 ttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaact 353  Q
    || ||||  ||| |  |||||| ||||  |  |||||| ||   ||| | ||||||||  ||  ||||| ||||||||||||| ||||  ||||||||||    
T  11772573 tttgccacatcatcctttgccacgtcagccgtcgttagacaatgaggtgcttttgtaacggaagttgacaggagggacgaaaatcaaaaagttattaact 11772672  T
Q  354 tacaggggttattttagaac 373  Q
    |||| ||||| |||||||||    
T  11772673 tacaagggttgttttagaac 11772692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 1418855 - 1418976
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||| ||||||| |||||||||       |||| ||||| ||||||||    
T  1418855 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacaa 1418954  T
Q  400 aaaacacgccaaattacaggga 421  Q
    |||||||| |||||||||||||    
T  1418955 aaaacacgtcaaattacaggga 1418976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 30332423 - 30332302
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||| ||||||||||||| ||||  |||||||||||| ||||||| |||||||||       |||| ||||| ||||||||    
T  30332423 gcgtttttgtaacggaagttgacaggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacaa 30332324  T
Q  400 aaaacacgccaaattacaggga 421  Q
    |||| |||||||||||||||||    
T  30332323 aaaatacgccaaattacaggga 30332302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 304 - 421
Target Start/End: Original strand, 30333930 - 30334047
Alignment:
Q  304 ttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaa 403  Q
    ||||||||| ||  ||||||||||||||||||| ||||  |||||||||||||||||||| |||||||||       |||| |||||  ||||| |||||    
T  30333930 ttttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaaccaaaaa 30334029  T
Q  404 cacgccaaattacaggga 421  Q
    |||||||||||| |||||    
T  30334030 cacgccaaattataggga 30334047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 241 - 339
Target Start/End: Complemental strand, 12250567 - 12250471
Alignment:
Q  241 cacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagca 339  Q
    ||||||||||||||||| |||||||||||  |||| ||||| | |||||||||| ||||  |||||||||  ||||||||| ||||||||| |||||||    
T  12250567 cacataagcgtgtttgggcaagtcagcacccgccacgtcacacgccgttagccatcaagatgtttttgta--agagtttgatgggagggacaaaaagca 12250471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 8872895 - 8872830
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||| ||| ||| || |||||||||||||||||||||||||| ||||||||||| ||||    
T  8872895 tttttaatttcatccttctgtaacttttcgtttttgattttggtccctgtaatatagtcagggatc 8872830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 36620913 - 36620978
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| ||| || ||||||||||||| |||||||||||| ||||||||||| ||||    
T  36620913 tttttaatttcgtccttctgtaacttttcgtttttggttttggtccctgtaatatagtcagggatc 36620978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 39102091 - 39102026
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| ||| || ||||||||||||| |||||||||||| ||||||||||| ||||    
T  39102091 tttttaatttcgtccttctgtaacttttcgtttttggttttggtccctgtaatatagtcagggatc 39102026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 417
Target Start/End: Original strand, 25916197 - 25916314
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  |||||||||||||||||||  |||  |||||||||||| ||||||| |||||||||       |||| |||||  ||||| |    
T  25916197 gcgtttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacaaaaacca 25916296  T
Q  400 aaaacacgccaaattaca 417  Q
    ||||||||||||||||||    
T  25916297 aaaacacgccaaattaca 25916314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 36619912 - 36619852
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcag 224  Q
    ||||||||||||||| ||| || ||||||||||||| |||||||||||| |||||||||||    
T  36619912 tttttaatttcgtccttctgtaacttttcgtttttggttttggtccctgtaatatagtcag 36619852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 5225109 - 5225041
Alignment:
Q  165 ttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatct 233  Q
    ||||||||||||||||||||| |||||  |||||| |||||||||||  |||||||| || ||||||||    
T  5225109 ttttaatttcgtccctctataactttttatttttggttttggtccctataatatagttagggatcatct 5225041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 373
Target Start/End: Original strand, 17554940 - 17554995
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaac 373  Q
    ||||||||||||||||||| ||||  ||||||||||| |||||||| |||||||||    
T  17554940 ttgacgggagggacgaaaatcaaaaagttattaacttgcaggggttgttttagaac 17554995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 8873959 - 8874024
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| ||| || ||||| |||| || |||||||||||| ||||||||||| ||||    
T  8873959 tttttaatttcgtccttctgtaactttttgtttctggttttggtccctgtaatatagtcagggatc 8874024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 39103094 - 39103154
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcag 224  Q
    ||||||||||||||| ||  || |||||| |||||| |||||||||||| |||||||||||    
T  39103094 tttttaatttcgtccttccgtaacttttcatttttggttttggtccctgtaatatagtcag 39103154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 12251224 - 12251130
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataag 248  Q
    |||||| |||||||||||||| |||| || || ||||| ||||||  ||||||||| || | | ||||||| || ||||| ||| ||||||||||    
T  12251224 tatttatgtgtttttaatttcatcccactgtaactttttgttttttgttttggtccatgtactctagtcagggaacatctgtcaatccacataag 12251130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 191
Target Start/End: Original strand, 17553284 - 17553321
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctatacctttt 191  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  17553284 tatttaggtgtttttaatttcgtccatctgtacctttt 17553321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 369
Target Start/End: Complemental strand, 25914630 - 25914561
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttatttta 369  Q
    ||||||||||||  ||  |||||||||||||||||||  |||  |||||||||| ||||||||| |||||    
T  25914630 gcgtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaactaacaggggttgtttta 25914561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 1417533 - 1417477
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttaca-ggggttattttagaac 373  Q
    |||||||||||||||||||  |||  |||||||||||||| |||||| |||||||||    
T  1417533 ttgacgggagggacgaaaataaaaaagttattaacttacagggggttgttttagaac 1417477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 28592290 - 28592242
Alignment:
Q  227 atcatctatcagtccacataagcgtgtttggccaagtcagcacttgcca 275  Q
    ||||||| |||| |||||||||||||||| |||| ||||||| ||||||    
T  28592290 atcatctgtcaggccacataagcgtgttttgccatgtcagcaattgcca 28592242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 105 - 418
Target Start/End: Complemental strand, 41668608 - 41668295
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcatatttaggtgtttttaatttcgtccctctataccttttcgtttttgatttt 204  Q
    |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  41668608 ggtcactgtaatatagtcagggatcttctggaaggccacctaaatttcatatttaggtgtttttaatttcgtccctctgtaccttttcgtttttggtttt 41668509  T
Q  205 ggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtt 304  Q
    |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||| |||    
T  41668508 ggtccctgtaatatagtcagggatcatctgtcagtccacataagcgtgtttggccaagtcagcacctgccacatcactcaccgttagccagcaaggtgtt 41668409  T
Q  305 tttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaac 404  Q
    ||||||| ||||||||||||||| |||||||||||||  ||||||||||||||| |||| |||||||||        ||| || || |||||| ||||||    
T  41668408 tttgtaacagagtttgacgggagagacgaaaagcaaaaagttattaacttacagaggttgttttagaacaaaaaaatatacagagacgaaaaccaaaaac 41668309  T
Q  405 acgccaaattacag 418  Q
    ||||||||||||||    
T  41668308 acgccaaattacag 41668295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 105 - 421
Target Start/End: Original strand, 19250878 - 19251202
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttca--------tatttaggtgtttttaatttcgtccctctataccttttcgttt 196  Q
    ||||| ||||||||||| |||||||||| || ||| | |||||||||||        ||||||||||||||||||||||||||| | |||||||||||||    
T  19250878 ggtccatgtaatatagttagggatcttctggtaggtcacctaaatttcaaattttgttatttaggtgtttttaatttcgtccctttgtaccttttcgttt 19250977  T
Q  197 ttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagc 296  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||| ||||||||| ||  |||||||||||| ||||| ||||  | | ||||||||||    
T  19250978 ttgattttggtccctgtaatatagtcagggatcatctgtcagtccatataagcgtgattaaccaagtcagcacctgccacgtcatacgctgttagccagc 19251077  T
Q  297 aaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaa 396  Q
    ||| ||||||||||| |||||||||| ||||||||||||||||||   ||||||| ||||||||||| |||||||||       ||||||||||  || |    
T  19251078 aagacgtttttgtaacagagtttgactggagggacgaaaagcaaaaaattattaatttacaggggttgttttagaacaaaaaaagatatagggacaaaca 19251177  T
Q  397 caaaaaacacgccaaattacaggga 421  Q
    |||||||||||| ||| ||||||||    
T  19251178 caaaaaacacgcaaaaatacaggga 19251202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 373
Target Start/End: Complemental strand, 19249602 - 19249387
Alignment:
Q  156 tttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgttt 255  Q
    ||||||||||||||||||||||||| | ||||||||| ||||| || ||||||| || ||||||||||| |||||| | ||| |||||| |||| || ||    
T  19249602 tttaggtgtttttaatttcgtccctatgtaccttttcattttttatgttggtccttgtaatatagtcagggatcatatgtcattccacacaagcatgctt 19249503  T
Q  256 ggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaactta 355  Q
     |||||||||||||  || | ||||| | || ||||||| ||||| | |||||||| ||||||| |||| ||||||||||||||||  ||||||||||||    
T  19249502 agccaagtcagcacccgcgacgtcacacgccattagccatcaaggtg-ttttgtaacagagttttacggaagggacgaaaagcaaa-agttattaactta 19249405  T
Q  356 caggggttattttagaac 373  Q
    | |||||| |||||||||    
T  19249404 ccggggttgttttagaac 19249387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 154 - 341
Target Start/End: Original strand, 10611592 - 10611782
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||||| ||||||||||||||| | | |||||||||||||||||||||||||  |    ||||||||| ||||||||  ||||||| ||||| ||||    
T  10611592 tatttaggtctttttaatttcgtccttttgtaccttttcgtttttgattttggtctatc---tatagtcagggatcatctgccagtccatataagtgtgt 10611688  T
Q  254 ttggccaagtcagcacttgccatgtc-ac-tcac----cgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaa 341  Q
    || || |||||||||| ||||| | | || ||||    ||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||    
T  10611689 ttagctaagtcagcacctgccacgcccacgtcacatgtcgttagccagcaaggagtttttgtaacagagtttaacgggagggacaaaaagcaaa 10611782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 28920574 - 28920695
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||       |||| |||||  |||||||    
T  28920574 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaggttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaacaa 28920673  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  28920674 aaaacacgccaaattacaggga 28920695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 300 - 419
Target Start/End: Original strand, 7655183 - 7655302
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||  |||||||||||||||||||| |||||||||       |||| ||||| |||||| |    
T  7655183 gcgtttttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacgaaaacca 7655282  T
Q  400 aaaacacgccaaattacagg 419  Q
    ||||||||||||||||||||    
T  7655283 aaaacacgccaaattacagg 7655302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 303 - 421
Target Start/End: Complemental strand, 36145481 - 36145363
Alignment:
Q  303 tttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaa 402  Q
    |||||||||| ||  ||||||||||||||||||| ||||  |||||||||||| ||||||| |||||||||       |||| ||||| |||||||||||    
T  36145481 tttttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacaaaaa 36145382  T
Q  403 acacgccaaattacaggga 421  Q
    | |||||||||||||||||    
T  36145381 atacgccaaattacaggga 36145363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 16673175 - 16673296
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||| ||||||| |||||||||       |||| ||||| |||||| |    
T  16673175 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacca 16673274  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||| ||||||||||||    
T  16673275 aaaacacgcaaaattacaggga 16673296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 28919223 - 28919102
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||| ||||||||||| ||||  |||||||||||| ||||||| |||||||||       |||| |||||||||||  |    
T  28919223 gcgtttttgtaacggaagttgacggaagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggatgaaaatca 28919124  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  28919123 aaaacacgccaaattacaggga 28919102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 303 - 421
Target Start/End: Complemental strand, 7653823 - 7653705
Alignment:
Q  303 tttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaa 402  Q
    |||||||||| ||  |||||||||||||| |||| ||||  |||||||||||| ||||| | |||||||||       |||| ||||| |||||||||||    
T  7653823 tttttgtaatggaagttgacgggagggacaaaaatcaaaaagttattaacttataggggctgttttagaacaaaaaaagatacagggacgaaaacaaaaa 7653724  T
Q  403 acacgccaaattacaggga 421  Q
    | |||||||||||||||||    
T  7653723 atacgccaaattacaggga 7653705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 19250733 - 19250794
Alignment:
Q  168 taatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| ||||    
T  19250733 taatttcgtccctctataacttttcgtttttggttttggtccctgtaatatagtcagggatc 19250794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 19250826 - 19250894
Alignment:
Q  154 tatttaggtgtttt-taatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagt 221  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||| || ||||||||    
T  19250826 tatttaggtgttttttaatttcctccctctataccttttcgtttttggttttggtccatgtaatatagt 19250894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 33259309 - 33259412
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattaca 417  Q
    |||||||||||||||||||  |||  |||||||||||| ||||||| ||||| |||       |||| ||||| |||||| |||||||||||||||||||    
T  33259309 ttgacgggagggacgaaaattaaaaagttattaacttataggggttgttttaaaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattaca 33259408  T
Q  418 ggga 421  Q
    ||||    
T  33259409 ggga 33259412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 33279468 - 33279571
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattaca 417  Q
    |||||||||||||||||||  |||  |||||||||||| ||||||| ||||| |||       |||| ||||| |||||| |||||||||||||||||||    
T  33279468 ttgacgggagggacgaaaattaaaaagttattaacttataggggttgttttaaaacaaaaaaagatacagggacgaaaaccaaaaacacgccaaattaca 33279567  T
Q  418 ggga 421  Q
    ||||    
T  33279568 ggga 33279571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 33258020 - 33257900
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||||| ||||| |||||||||       |||| | |||  ||||| |    
T  33258020 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttaca-gggttgttttagaacaaaaaaagatacaaggacaaaaacca 33257922  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  33257921 aaaacacgccaaattacaggga 33257900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 33278192 - 33278072
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||||| ||||| |||||||||       |||| | |||  ||||| |    
T  33278192 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttaca-gggttgttttagaacaaaaaaagatacaaggacaaaaacca 33278094  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  33278093 aaaacacgccaaattacaggga 33278072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 418
Target Start/End: Original strand, 19057786 - 19057904
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    |||||||||||| |||  ||||||| |||||||||||  |||  |||||||||||| ||||||| |||||||||       |||| | | | |||||| |    
T  19057786 gcgtttttgtaacagaagttgacggaagggacgaaaataaaaaagttattaacttataggggttgttttagaacaaaaaaagatacatgaacgaaaacta 19057885  T
Q  400 aaaacacgccaaattacag 418  Q
    |||||||||||||||||||    
T  19057886 aaaacacgccaaattacag 19057904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 33983215 - 33983263
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctg 212  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  33983215 tttttaatttcgtccctctctaatttttcgtttttgattttggtccctg 33983263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 36146831 - 36146951
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||||| || || |||||||||       |||| | ||| |||||| |    
T  36146831 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacatggattgttttagaacaaaaaaagataca-ggacgaaaacca 36146929  T
Q  400 aaaacacgccaaattacaggga 421  Q
    |||||||| |||||||||||||    
T  36146930 aaaacacgtcaaattacaggga 36146951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 16672795 - 16672722
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaac 373  Q
    ||||||||||||  ||  ||||||||||||||| ||| ||||  |||||||||||| ||||||| |||||||||    
T  16672795 gcgtttttgtaacggaagttgacgggagggacggaaatcaaaaagttattaacttataggggttgttttagaac 16672722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 41668649 - 41668584
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||||||| ||| || | ||||||||||| |||||||| ||| ||||||||||| ||||    
T  41668649 tttttaatttcgtccttctgtaacatttcgtttttggttttggtcactgtaatatagtcagggatc 41668584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 24437341 - 24437293
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctg 212  Q
    ||||||||||||||||| | ||  |||||||||||||||||||||||||    
T  24437341 tttttaatttcgtccctatgtaatttttcgtttttgattttggtccctg 24437293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 24438740 - 24438785
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtcc 209  Q
    |||| |||||||||||||| ||  ||||||||||||||||||||||    
T  24438740 ttttgaatttcgtccctctgtaatttttcgtttttgattttggtcc 24438785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 373
Target Start/End: Original strand, 50316969 - 50317042
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaac 373  Q
    |||||||||||| |||   |||||||||||||||||| ||||  |||  |||||||||||| || |||||||||    
T  50316969 gcgtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaac 50317042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 16592080 - 16592040
Alignment:
Q  381 gatatagggatgaaaacaaaaaacacgccaaattacaggga 421  Q
    |||| ||||| |||||| |||||||||||||||||||||||    
T  16592080 gatacagggacgaaaaccaaaaacacgccaaattacaggga 16592040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 154 - 421
Target Start/End: Complemental strand, 28563662 - 28563395
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||||||||||||||||  ||||| | |||||||||||||||| |||||||||||| ||||||||||  |||||||| |||||||||||||||||||    
T  28563662 tatttaggtgtttttaattttatccctttgtaccttttcgtttttggttttggtccctgtaatatagtcaaggatcatctgtcagtccacataagcgtgt 28563563  T
Q  254 ttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaact 353  Q
    |||||||||||||| | ||||| ||||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||  ||||||||||    
T  28563562 ttggccaagtcagcccctgccacgtcactcactgttagcctgcaaggcatttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaact 28563463  T
Q  354 tacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattacaggga 421  Q
    || ||||||| ||||||||        |||| | ||| |||||| |||||||||||||||||||||||    
T  28563462 tataggggttgttttagaagaaaaaaagatacaaggacgaaaaccaaaaacacgccaaattacaggga 28563395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 154 - 421
Target Start/End: Complemental strand, 45499591 - 45499324
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||| |||||||||||| ||||||||||| |||||||| |||   ||||||||||| |    
T  45499591 tatttaggtgtttttaatttcgtccctatgtaccttttcctttttggttttggtccctgtaatatagtcagggatcatctgtcacgacacataagcgttt 45499492  T
Q  254 ttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaact 353  Q
    || ||||  ||| |  ||||||||||| || ||||||| |||  ||||||||||||||  ||  ||||||||||||||||||| ||||  ||||||||||    
T  45499491 tttgccacatcatcctttgccatgtcagtcgccgttagacagtgaggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaact 45499392  T
Q  354 tacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattacaggga 421  Q
    |||||||||| |||||||||       ||||  |||| |||||| |||||||||| || |||||||||    
T  45499391 tacaggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaacttacaggga 45499324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 154 - 421
Target Start/End: Complemental strand, 40303579 - 40303312
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||| |||||||||||| ||||||||||| |||||||| |||   ||||||||||| |    
T  40303579 tatttaggtgtttttaatttcgtccctatgtaccttttcctttttggttttggtccctgtaatatagtcagggatcatctgtcacgacacataagcgttt 40303480  T
Q  254 ttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaact 353  Q
    || ||||  ||| |  ||||||||||| || ||||||| |||  ||||||||||||||  ||  ||||||||||||||||||| ||||  ||||||||||    
T  40303479 tttgccacatcatcctttgccatgtcagtcgccgttagacagtgaggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaact 40303380  T
Q  354 tacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattacaggga 421  Q
    || ||||||| |||||||||       ||||  |||| |||||| |||||||||| || |||||||||    
T  40303379 tataggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaacttacaggga 40303312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 1841674 - 1841795
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  |||||||||||||||||||  |||  |||||||||||||||||||| |||||||||       |||| |||||  ||||| |    
T  1841674 gcgtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaacca 1841773  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||| ||||||    
T  1841774 aaaacacgccaaatttcaggga 1841795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 13947887 - 13947767
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||| ||||||| |||||||||       |||| | ||| |||||| |    
T  13947887 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagataca-ggacgaaaacca 13947789  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  13947788 aaaacacgccaaattacaggga 13947767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 14089076 - 14088956
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||| ||||||| |||||||||       |||| | ||| |||||| |    
T  14089076 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagataca-ggacgaaaacca 14088978  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  14088977 aaaacacgccaaattacaggga 14088956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 421
Target Start/End: Complemental strand, 1840279 - 1840176
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattaca 417  Q
    ||||||||||||||||||| ||||  |||||||||||| ||||||| |||||||||       |||| | | |  ||||| |||||||||||||||||||    
T  1840279 ttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacaagaacaaaaaccaaaaacacgccaaattaca 1840180  T
Q  418 ggga 421  Q
    ||||    
T  1840179 ggga 1840176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 16142492 - 16142444
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctg 212  Q
    ||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  16142492 tttttaatttcgtccctctgtaatttttcgtttttgattttggtccctg 16142444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 38728450 - 38728398
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaat 216  Q
    ||||||||||||||| ||| ||  |||||||||||||||||||||||||||||    
T  38728450 tttttaatttcgtccttctgtaatttttcgtttttgattttggtccctgcaat 38728398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 192 - 372
Target Start/End: Original strand, 44097162 - 44097342
Alignment:
Q  192 cgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttag 291  Q
    |||||||| ||||||||| |  ||| |||||| | ||||||| ||||| ||||||||||||||| |||| ||||||  |||||| ||      ||||| |    
T  44097162 cgtttttggttttggtccttcaaatctagtcacttatcatctgtcagtacacataagcgtgttttgccatgtcagcgattgccacgtgtaattccgtttg 44097261  T
Q  292 ccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaa 372  Q
    ||| ||| |||||||||||| |||  || |||  |||||| |||| |||| |||||  ||||||||||| || ||||||||    
T  44097262 ccaacaacgcgtttttgtaacagaagttaacgttagggactaaaaccaaaaggttaacaacttacagggtttgttttagaa 44097342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 40304699 - 40304802
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattaca 417  Q
    ||||||| ||||||||||  ||||  ||||| ||||||||||| || |||||||||       |||| ||||| |||||| |||||||||| || |||||    
T  40304699 ttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttaca 40304798  T
Q  418 ggga 421  Q
    ||||    
T  40304799 ggga 40304802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 45492969 - 45493072
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattaca 417  Q
    ||||||| ||||||||||  ||||  ||||| ||||||||||| || |||||||||       |||| ||||| |||||| |||||||||| || |||||    
T  45492969 ttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaatttaca 45493068  T
Q  418 ggga 421  Q
    ||||    
T  45493069 ggga 45493072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 45500711 - 45500814
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattaca 417  Q
    ||||||| ||||||||||  ||||  ||||| ||||||||||| || |||||||||       |||| ||||| |||||| |||||||||| || |||||    
T  45500711 ttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaatttaca 45500810  T
Q  418 ggga 421  Q
    ||||    
T  45500811 ggga 45500814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 392 - 424
Target Start/End: Original strand, 44421353 - 44421385
Alignment:
Q  392 gaaaacaaaaaacacgccaaattacagggatga 424  Q
    |||||||||||||||||||| ||||||||||||    
T  44421353 gaaaacaaaaaacacgccaatttacagggatga 44421385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 154 - 421
Target Start/End: Complemental strand, 46245408 - 46245141
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||| |||||||| |||   ||||||||||| |    
T  46245408 tatttaggtgtttttaatttcgtccctatgtaccttttcgtttttggttttggtccctgtaatatagtcagggatcatctgtcacgacacataagcgttt 46245309  T
Q  254 ttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaact 353  Q
    || ||||  ||| |  |||||| ||||  | ||||||| |||| ||||||||||||||  ||  ||||||||||||||||||| ||||  ||||||||||    
T  46245308 tttgccacatcatcctttgccacgtcagccgccgttagacagcgaggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaact 46245209  T
Q  354 tacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattacaggga 421  Q
    |||||||||| |||||||||       ||||  |||| |||||| |||||||||| || |||||||||    
T  46245208 tacaggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaacttacaggga 46245141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 214 - 372
Target Start/End: Original strand, 30792663 - 30792821
Alignment:
Q  214 aatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaata 313  Q
    ||||||||||  |||||||| ||||||||||||| ||||||| ||||||||||||| || || ||||| |  ||||||| |||||||||||||||||| |    
T  30792663 aatatagtcatggatcatctctcagtccacataaacgtgtttagccaagtcagcacctgtcacgtcacacgtcgttagctagcaaggcgtttttgtaaca 30792762  T
Q  314 gagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaa 372  Q
     |||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  30792763 aagtttgacgggagggacgaaaagcaaaaagttattaacttacaggggttgttttagaa 30792821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 154 - 336
Target Start/End: Complemental strand, 30791534 - 30791352
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||||| |||||||||| || |||||||||||||| ||||||||||||| ||| |  |||||||| || ||||||| |||||||||||||| |||||    
T  30791534 tatttaggtttttttaattttgttcctctatacctttttgtttttgattttgatccatataatatagttagggatcatcaatcagtccacataaacgtgt 30791435  T
Q  254 ttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaa 336  Q
    || ||||| |||||||  ||||| |||| | ||| |||||| ||||| ||||||||||  | ||||||||| | |||||||||    
T  30791434 ttagccaaatcagcacccgccatatcacacgccgctagccaacaaggtgtttttgtaacggtgtttgacggaaaggacgaaaa 30791352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 226 - 370
Target Start/End: Original strand, 9532459 - 9532603
Alignment:
Q  226 gatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacggg 325  Q
    |||||||| ||| ||||||||| |||||||  |||||||||||    ||   |||| ||||||||||||||||| ||||||||||| ||||||||| |||    
T  9532459 gatcatctgtcaatccacataaacgtgtttatccaagtcagcatccaccgcatcacacaccgttagccagcaagacgtttttgtaacagagtttgatggg 9532558  T
Q  326 agggacgaaaagcaaatggttattaacttacaggggttattttag 370  Q
    ||||||||||||||||  |||||||| |||| |||||| ||||||    
T  9532559 agggacgaaaagcaaaaagttattaatttactggggttgttttag 9532603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 40028597 - 40028476
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  |||||||||||||||||||  |||  |||||||||||| ||||||| |||||||||       |||| ||||| |||||| |    
T  40028597 gcgtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacca 40028498  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  40028497 aaaacacgccaaattacaggga 40028476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 40029948 - 40030069
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||| ||||||| || |||| |||||||||        ||| ||||||||||||||    
T  40029948 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttactaacttatagaggttgttttagaacaaaaaaatatacagggatgaaaacaa 40030047  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  40030048 aaaacacgccaaattacaggga 40030069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 45277886 - 45278007
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||| ||||||| ||||| |||       |||| ||||| |||||| |    
T  45277886 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttataggggttgttttaaaacaaaaaaagatacagggacgaaaacca 45277985  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  45277986 aaaacacgccaaattacaggga 45278007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 372
Target Start/End: Complemental strand, 15135664 - 15135446
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    |||||| ||||||||||||||||| || | |||||||||||||||| ||||||||| || |||||||| |  |||||| | |||   ||||||||  | |    
T  15135664 tatttatgtgtttttaatttcgtcactttgtaccttttcgtttttggttttggtccttgtaatatagttaaggatcatttgtcacgacacataagacttt 15135565  T
Q  254 ttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaact 353  Q
    || ||||  ||| |  | |||| ||||  | ||||||| ||    ||||||||||||| | |  ||||||||||||||||||| ||||  ||||||||||    
T  15135564 tttgccacatcatccttcgccacgtcagccgccgttagacactttggcgtttttgtaacaaaagttgacgggagggacgaaaatcaaaaagttattaact 15135465  T
Q  354 tacaggggttattttagaa 372  Q
    | |||||||| ||||||||    
T  15135464 tgcaggggttgttttagaa 15135446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 419
Target Start/End: Original strand, 21716538 - 21716657
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  ||||||||||||||||| || ||||| |||       |||| ||||| |||||| |    
T  21716538 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacagggattgttttaaaacaaaaaaagatacagggacgaaaacca 21716637  T
Q  400 aaaacacgccaaattacagg 419  Q
    ||||||||||||||||||||    
T  21716638 aaaacacgccaaattacagg 21716657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 421
Target Start/End: Original strand, 21914510 - 21914678
Alignment:
Q  247 agcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggtt 346  Q
    ||||||||| | |||||||||||  |||| |||||    |||||||| ||||||||||||||||| ||||||||||  ||||||| ||||| |||  |||    
T  21914510 agcgtgtttagtcaagtcagcacccgccacgtcacatctcgttagcctgcaaggcgtttttgtaacagagtttgacatgagggacaaaaagaaaa--gtt 21914607  T
Q  347 attaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattacaggga 421  Q
    ||||||||| ||| ||| ||||| ||        |||||||||| |||||| |||||||| ||||||||||||||    
T  21914608 attaacttataggtgttgttttataa----aaaagatatagggacgaaaaccaaaaacacaccaaattacaggga 21914678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 256
Target Start/End: Complemental strand, 37132121 - 37132019
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||||||||||||||||||||||||| ||   ||||||||||  |||||||||||| |||||||| || |||||||| |||   ||||||||||| |    
T  37132121 tatttaggtgtttttaatttcgtccctctgtaatatttcgtttttagttttggtccctgtaatatagttagggatcatctgtcacgacacataagcgttt 37132022  T
Q  254 ttg 256  Q
    |||    
T  37132021 ttg 37132019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 300 - 419
Target Start/End: Complemental strand, 45276549 - 45276430
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||||||||||| |||||||||       |||| |||||  ||||| |    
T  45276549 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaacca 45276450  T
Q  400 aaaacacgccaaattacagg 419  Q
    ||||| ||||||||||||||    
T  45276449 aaaactcgccaaattacagg 45276430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 8231553 - 8231674
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  |||||||||| |||||||| ||||  |||||||||||||||||||| |||||||||       |||| |||||  ||||| |    
T  8231553 gcgtttttgtaacggaagttgacgggagtgacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacagggacaaaaacca 8231652  T
Q  400 aaaacacgccaaattacaggga 421  Q
    |||||| |||||||||||||||    
T  8231653 aaaacaagccaaattacaggga 8231674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 31392198 - 31392077
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||| ||||||||||||||| ||||  |||||||||||| ||||||| |||||||||       |||| ||||| |||||| |    
T  31392198 gcgtttttgtaacggaagttggcgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacca 31392099  T
Q  400 aaaacacgccaaattacaggga 421  Q
    |||||||| |||||||||||||    
T  31392098 aaaacacgtcaaattacaggga 31392077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 31393578 - 31393699
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  |||||||||||||||||||  |||  |||||||||||||||||||| ||||| |||       |||| | ||| |||||| |    
T  31393578 gcgtttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttacaggggttgttttataacaaaaaaagatacaaggacgaaaacca 31393677  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  31393678 aaaacacgccaaattacaggga 31393699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 154 - 229
Target Start/End: Original strand, 31734528 - 31734603
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    |||||||||||||||||||||| | |||| ||||||||| |||||| |||||||| ||| ||||||||||| ||||    
T  31734528 tatttaggtgtttttaatttcgcctctctgtaccttttcatttttggttttggtctctgtaatatagtcagggatc 31734603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 8230210 - 8230089
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  |||||| ||||||||||||  |||  |||||||||||| ||||||| |||||||||       |||| ||||| |||||| |    
T  8230210 gcgtttttgtaacggaagttgacgagagggacgaaaataaaaaagttattaacttataggggttgttttagaacaaaaaaagatacagggacgaaaacca 8230111  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||| ||||||||||||||    
T  8230110 aaaacacaccaaattacaggga 8230089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 21715212 - 21715091
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||| |||| || ||||| |||       |||| ||||| |||||  |    
T  21715212 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatagggattgttttaaaacaaaaaaagatacagggacgaaaatca 21715113  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  21715112 aaaacacgccaaattacaggga 21715091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 373
Target Start/End: Complemental strand, 14774653 - 14774579
Alignment:
Q  299 ggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaac 373  Q
    |||||||||||||  ||  ||||||||||||||||||| ||||  ||||||||||| |||||||| |||||||||    
T  14774653 ggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggttgttttagaac 14774579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 373
Target Start/End: Complemental strand, 15225106 - 15225032
Alignment:
Q  299 ggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaac 373  Q
    |||||||||||||  ||  ||||||||||||||||||| ||||  ||||||||||| |||||||| |||||||||    
T  15225106 ggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttgcaggggttgttttagaac 15225032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 30791628 - 30791562
Alignment:
Q  168 taatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatcta 234  Q
    ||||||||| ||||| || |||||| |||||| ||||||| |||| |||||||||||||||||||||    
T  30791628 taatttcgttcctctgtaacttttcatttttggttttggtgcctgtaatatagtcagtgatcatcta 30791562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 4675716 - 4675836
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||| || |||| |||||||||       |||| | ||| |||||  |    
T  4675716 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatagtggttgttttagaac-aaaaaagatacatggacgaaaatca 4675814  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  4675815 aaaacacgccaaattacaggga 4675836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 421
Target Start/End: Original strand, 12180559 - 12180679
Alignment:
Q  301 cgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaa 400  Q
    ||||||||||| |||   |||||||||||||||||| ||||  |||  |||||||||||| || |||||||||       |||| ||||| |||||| ||    
T  12180559 cgtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaa 12180658  T
Q  401 aaacacgccaaattacaggga 421  Q
    |||||||| || |||||||||    
T  12180659 aaacacgcgaacttacaggga 12180679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 14780705 - 14780668
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctatacctttt 191  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  14780705 tatttaggtgtttttaatttcgtccctctgtacctttt 14780668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 154 - 191
Target Start/End: Complemental strand, 15230724 - 15230687
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctatacctttt 191  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  15230724 tatttaggtgtttttaatttcgtccctctgtacctttt 15230687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 32881256 - 32881183
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaac 373  Q
    ||||||||||||  ||  |||| |||||||||||||| ||||  |||||||||||| ||||||| |||||||||    
T  32881256 gcgtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttataggggttgttttagaac 32881183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 265
Target Start/End: Complemental strand, 11670087 - 11670016
Alignment:
Q  194 tttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtca 265  Q
    |||||| |||||||||||  ||| |||||| | ||||||| ||||| ||||||||||||||| |||| ||||    
T  11670087 tttttggttttggtccctcaaatctagtcacttatcatctgtcagtacacataagcgtgttttgccatgtca 11670016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 46246512 - 46246615
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattaca 417  Q
    ||||||| ||||||||||  ||||  ||||| ||||||||||| || |||||||||       |||| ||||| |||||| |||||||||| || |||||    
T  46246512 ttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttaca 46246611  T
Q  418 ggga 421  Q
    ||||    
T  46246612 ggga 46246615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 11747672 - 11747627
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttg 199  Q
    |||||| ||||||||||||| |||||||| || |||||||||||||    
T  11747672 tatttatgtgtttttaattttgtccctctgtatcttttcgtttttg 11747627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 12180432 - 12180480
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctg 212  Q
    |||| |||||||||||||| ||  |||||||||||||||||| ||||||    
T  12180432 ttttgaatttcgtccctctgtaatttttcgtttttgattttgatccctg 12180480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 235 - 373
Target Start/End: Complemental strand, 31657159 - 31657021
Alignment:
Q  235 tcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaa 334  Q
    ||||||||||||||| |||||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31657159 tcagtccacataagcatgtttgaccaagtcagcacctgccaagtcactcactgttagccagcaaggcgtttttgtaacagagtttgacgggagggacgaa 31657060  T
Q  335 aagcaaatggttattaacttacaggggttattttagaac 373  Q
    |||||||  ||||||||||||||||| || |||||||||    
T  31657059 aagcaaaaagttattaacttacagggattgttttagaac 31657021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 154 - 421
Target Start/End: Original strand, 40499025 - 40499292
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||| |||||||| |||   ||||||||||| |    
T  40499025 tatttaggtgtttttaatttcgtccctatgtaccttttcgtttttggttttggtccctgtaatatagtcagggatcatctgtcacgacacataagcgttt 40499124  T
Q  254 ttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaact 353  Q
    || ||||  ||| |  |||||| ||||  | ||||||| |||| ||||||||||||||  ||  ||||||||||||||||||| ||||  ||||||||||    
T  40499125 tttgccacatcatcctttgccacgtcagccgccgttagacagcgaggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaact 40499224  T
Q  354 tacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattacaggga 421  Q
    ||| |||||| |||||||||       ||||  |||| |||||| |||||||||| || |||||||||    
T  40499225 taccggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaacttacaggga 40499292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 154 - 421
Target Start/End: Original strand, 31796607 - 31796874
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||| |||||||||||| ||||||||||| |||||||| |||   ||||| ||||| |    
T  31796607 tatttagttgtttttaatttcgtccctatgtaccttttcctttttggttttggtccctgtaatatagtcagggatcatctgtcacgacacatcagcgttt 31796706  T
Q  254 ttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaact 353  Q
    || ||||  ||| |  ||||||||||| || ||||||| |||  ||||||||||||||  ||  ||||||||||||||||||| ||||  ||||||||||    
T  31796707 tttgccacatcatcctttgccatgtcagtcgccgttagacagtgaggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaact 31796806  T
Q  354 tacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattacaggga 421  Q
    |||||||||| |||||||||       ||||  |||| |||||| |||||||||| || |||||||||    
T  31796807 tacaggggttgttttagaacaaaaaaagatacggggacgaaaaccaaaaacacgcgaacttacaggga 31796874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 154 - 373
Target Start/End: Original strand, 41083044 - 41083262
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||||||||||||||||||||||| | ||||||||  |||||| |||||||||||| ||||||||||| |||||||| |||   ||||||||||| |    
T  41083044 tatttaggtgtttttaatttcgtccctatgtacctttttctttttggttttggtccctgtaatatagtcagggatcatctgtcacgacacataagcgttt 41083143  T
Q  254 ttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaact 353  Q
    || ||||  ||| |  ||||||||||| || ||| ||| |||  ||||||||||||||  ||  ||||||||||||||||||| ||||  ||||||||||    
T  41083144 tttgccacatcatcctttgccatgtcagtcgccg-tagacagtgaggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaact 41083242  T
Q  354 tacaggggttattttagaac 373  Q
    |||||||||| |||||||||    
T  41083243 tacaggggttgttttagaac 41083262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 154 - 373
Target Start/End: Original strand, 48568303 - 48568522
Alignment:
Q  154 tatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgt 253  Q
    ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||| |||||||| |||   ||||||||  | |    
T  48568303 tatttaggtgtttttaatttcgtccctatgtaccttttcgtttttggttttggtccctgtaatatagtcagggatcatctgtcacgacacataagaattt 48568402  T
Q  254 ttggccaagtcagcacttgccatgtcactcaccgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaact 353  Q
    || ||||  ||| |  |||||| | ||  |  |||||| |||  ||||||||||||||  ||  ||||||||||||||||||| ||||  ||||||||||    
T  48568403 tttgccacatcatcctttgccacgacatccgtcgttagacagggaggcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaact 48568502  T
Q  354 tacaggggttattttagaac 373  Q
    |||||||||| |||||||||    
T  48568503 tacaggggttgttttagaac 48568522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 31657265 - 31657163
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttcat--------atttaggtgtttttaatttcgtccctctataccttttcgttt 196  Q
    |||||||||||||||||||||||||||| |||||||| |||| |||||||        ||||||||||||||||||| |||||||| ||||||||| |||    
T  31657265 ggtccctgtaatatagtcagggatcttctggaaggccacctacatttcatattttgttatttaggtgtttttaattttgtccctctgtaccttttcattt 31657166  T
Q  197 ttg 199  Q
    |||    
T  31657165 ttg 31657163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 53528110 - 53527989
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||||||| ||| |||||||||       |||| ||||| |||||| |    
T  53528110 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttacaggagttgttttagaacaaaaaaagatacagggacgaaaacca 53528011  T
Q  400 aaaacacgccaaattacaggga 421  Q
    |||||||||||||||| |||||    
T  53528010 aaaacacgccaaattaaaggga 53527989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 421
Target Start/End: Original strand, 53529471 - 53529574
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattaca 417  Q
    ||||||||||||||||||| ||||  |||||||||||| ||||| |||||||||||       |||| ||||| |||||| ||||| |||||||||||||    
T  53529471 ttgacgggagggacgaaaatcaaaaagttattaacttataggggctattttagaacaaaaaaagatacagggacgaaaactaaaaatacgccaaattaca 53529570  T
Q  418 ggga 421  Q
    ||||    
T  53529571 ggga 53529574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 31657305 - 31657241
Alignment:
Q  165 ttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    |||||||||||||| ||| || ||||||||||||| |||||||||||| ||||||||||| ||||    
T  31657305 ttttaatttcgtccttctgtaacttttcgtttttggttttggtccctgtaatatagtcagggatc 31657241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 33733105 - 33732984
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||| ||||||||| ||||  |||||||||||| ||||||| |||||||||        ||| ||| | |||||| |    
T  33733105 gcgtttttgtaacggaagttgacgggaaggacgaaaatcaaaaagttattaacttataggggttgttttagaacaaaaaaaaatacaggaacgaaaacca 33733006  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  33733005 aaaacacgccaaattacaggga 33732984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 421
Target Start/End: Original strand, 33734421 - 33734542
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  |||| |||||||||||||| ||||  |||||||||||||||||||| |||||||||       |||| ||| |  ||||| |    
T  33734421 gcgtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttacaggggttgttttagaacaaaaaaagatacaggaaccaaaacca 33734520  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||| ||||||||||||    
T  33734521 aaaacacgctaaattacaggga 33734542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 32559191 - 32559111
Alignment:
Q  169 aatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagc 249  Q
    |||||||||||||| ||  ||| ||||||||||||||||||||  || ||||||| | ||||||| |||| |||| |||||    
T  32559191 aatttcgtccctctgtaaatttgcgtttttgattttggtccctaaaaaatagtcacttatcatctgtcaggccacgtaagc 32559111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 41881465 - 41881537
Alignment:
Q  193 gtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtca 265  Q
    ||||||| |||||||||||  ||| |||||| | ||||||| ||||| ||||||||||||||| |||| ||||    
T  41881465 gtttttggttttggtccctcaaatctagtcacttatcatctgtcagtacacataagcgtgttttgccatgtca 41881537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 265
Target Start/End: Complemental strand, 44458883 - 44458771
Alignment:
Q  153 atatttaggtgtttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtg 252  Q
    ||||||| || ||||||||||| |||||||  |  ||| ||||||||||||||||||||  ||| |||||| |  | |||| | ||| ||||||||||||    
T  44458883 atatttacgtttttttaatttcatccctctgcaattttgcgtttttgattttggtccctcaaatctagtcacttttgatctgtgagtacacataagcgtg 44458784  T
Q  253 tttggccaagtca 265  Q
    ||| |||| ||||    
T  44458783 ttttgccatgtca 44458771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 421
Target Start/End: Complemental strand, 41081924 - 41081821
Alignment:
Q  318 ttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaattaca 417  Q
    ||||||| ||||||||||  ||||  ||||| ||||||||||| || |||||||||       |||| ||||| |||||| |||||||||| || |||||    
T  41081924 ttgacggtagggacgaaattcaaaaagttatcaacttacagggtttgttttagaacaaaaaaagatacagggacgaaaaccaaaaacacgcgaacttaca 41081825  T
Q  418 ggga 421  Q
    ||||    
T  41081824 ggga 41081821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 105 - 357
Target Start/End: Complemental strand, 31917322 - 31917062
Alignment:
Q  105 ggtccctgtaatatagtcagggatcttccggaaggcctcctaaatttca--------tatttaggtgtttttaatttcgtccctctataccttttcgttt 196  Q
    |||||||||||||||||||| |||| |  |||| ||| |||||||||||        ||||||||||||||||||||||||||| | |||||||||||||    
T  31917322 ggtccctgtaatatagtcagagatcgtatggaaagccacctaaatttcaaattttgttatttaggtgtttttaatttcgtccctttgtaccttttcgttt 31917223  T
Q  197 ttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactcaccgttagccagc 296  Q
    ||| ||||||| |||| |||||||| || |||||| | |||   |||| || ||||||| |||||  ||||||  |||| | ||| ||| |||| ||| |    
T  31917222 ttggttttggttcctgtaatatagttagggatcatatgtcacaacacacaaacgtgtttagccaaaccagcacccgccacggcacacactgttatccaac 31917123  T
Q  297 aaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttaca 357  Q
    |||  ||||||||||| ||||||||||| | ||||||||||||||  ||||||||||||||    
T  31917122 aagatgtttttgtaattgagtttgacggtatggacgaaaagcaaaaagttattaacttaca 31917062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 418
Target Start/End: Original strand, 25265824 - 25265942
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||||||| |||| || ||||| |||       |||| ||||| ||||||||    
T  25265824 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatagggattgttttaaaacaaaaaaagatacagggacgaaaacaa 25265923  T
Q  400 aaaacacgccaaattacag 418  Q
    |||||||||||||||||||    
T  25265924 aaaacacgccaaattacag 25265942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 421
Target Start/End: Complemental strand, 25264480 - 25264359
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||| |||||||| || ||||| |||       |||| | ||| |||||| |    
T  25264480 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaatttacagggattgttttaaaacaaaaaaagatacaaggacgaaaacca 25264381  T
Q  400 aaaacacgccaaattacaggga 421  Q
    ||||||||||||||||||||||    
T  25264380 aaaacacgccaaattacaggga 25264359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 418
Target Start/End: Original strand, 33295365 - 33295482
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaa 399  Q
    ||||||||||||  ||  ||||||||||||||| ||| ||||  |||||||||||||| ||||| |||||||||       |||| |||||  |||||||    
T  33295365 gcgtttttgtaacggaagttgacgggagggacggaaatcaaaaagttattaacttacaagggttgttttagaac-aaaaaagatacagggacaaaaacaa 33295463  T
Q  400 aaaacacgccaaattacag 418  Q
    |||||||||||||||||||    
T  33295464 aaaacacgccaaattacag 33295482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 371
Target Start/End: Complemental strand, 41912727 - 41912540
Alignment:
Q  184 taccttttcgtttttgattttggtccctgcaatatagtcagtgatcatctatcagtccacataagcgtgtttggccaagtcagcacttgccatgtcactc 283  Q
    |||||||||||||| | |||  ||||||| |||||||| |  |||||| | |||||| |||||| ||||||| ||||||||| |||   |||   ||| |    
T  41912727 taccttttcgttttaggtttgtgtccctgtaatatagttaaggatcatttgtcagtctacataaacgtgtttagccaagtcaacacccaccacaccacac 41912628  T
Q  284 accgttagccagcaaggcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttaga 371  Q
      ||||||||| |||| | |||||||| ||||||||||  |  |||||||||| ||||   |||||||||||||  |||| |||||||    
T  41912627 gtcgttagccaacaagacctttttgtactagagtttgaaagacgggacgaaaaacaaaatattattaacttacaatggttgttttaga 41912540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 33294080 - 33294007
Alignment:
Q  300 gcgtttttgtaatagagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaac 373  Q
    ||||||||||||  ||  ||||||||||||||||||| ||||  |||||||| ||| ||||||| |||||||||    
T  33294080 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaatttataggggttgttttagaac 33294007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 31917363 - 31917298
Alignment:
Q  164 tttttaatttcgtccctctataccttttcgtttttgattttggtccctgcaatatagtcagtgatc 229  Q
    ||||||||||| ||||| | || |||||| |||||  |||||||||||| ||||||||||| ||||    
T  31917363 tttttaatttcatccctttgtaacttttcattttttgttttggtccctgtaatatagtcagagatc 31917298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 21128129 - 21128081
Alignment:
Q  164 tttttaatttcgtccctctat-accttttcgtttttgattttggtccct 211  Q
    ||||||||||||||||||||| |  ||||||||||||| ||||||||||    
T  21128129 tttttaatttcgtccctctataaatttttcgtttttgaatttggtccct 21128081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 418
Target Start/End: Original strand, 6826 - 6931
Alignment:
Q  313 agagtttgacgggagggacgaaaagcaaatggttattaacttacaggggttattttagaacnnnnnnngatatagggatgaaaacaaaaaacacgccaaa 412  Q
    ||||||||||||||| |||||||||||||  ||||||||||||||| |||| |||||||||        ||| || || |||||| ||||||||||||||    
T  6826 agagtttgacgggagagacgaaaagcaaaaagttattaacttacagaggttgttttagaacaaaaaaatatacagagacgaaaaccaaaaacacgccaaa 6925  T
Q  413 ttacag 418  Q
    ||||||    
T  6926 ttacag 6931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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