View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1942_low_1 (Length: 615)
Name: NF1942_low_1
Description: NF1942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1942_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 61 - 599
Target Start/End: Complemental strand, 33685811 - 33685273
Alignment:
| Q |
61 |
cttttcaaataactaaacccaaactagggcctagcactaccacgcgttcggctcatttcagttggatagaaacacctagccacgtggaccaccttaccct |
160 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33685811 |
cttttcgaataactgaacccaaactagggcctagcactaccacgcgttcggctcatttcagttggatagaaacacctagccacgtggaccaccttaccct |
33685712 |
T |
|
| Q |
161 |
ttcccgccgattcacacacagcgccaaactataaagtcagttactccannnnnnnaaaccaacctttaccttctccatcgcaaaccctattccatgacac |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33685711 |
ttcccgccgattcacacacagcgccaaactataaagtcagttactccatttttttaaaccaacctttaccttctccatcgcaaaccctattccatgacac |
33685612 |
T |
|
| Q |
261 |
tacaatgctcttcaatagcattttccgacggaaactactctctcgacttcaaccatggcttttcgaagaaccacaactcaatctcgaattagggttcttc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33685611 |
tacaatgctcttcaatagcattttccgacggaaactactctctctacttcaaccatggcttttcgaagaaccacaactcaatctcgaattagggttcttc |
33685512 |
T |
|
| Q |
361 |
cactctctcgccgttgtcaccaatctccgcttcgatgtcgctgttctcaacaaactattccactctcctccgttattgttcgtcaaggatttcactgttg |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33685511 |
cactctctcgccgttgtcaccaatctccgcttcgatgtcgctgttctcaacaaactattccactctcctccgttattgttcgtcaaggatttcactgttg |
33685412 |
T |
|
| Q |
461 |
aacgtcttgttgttcgattctcatcctcgtcttcgccggcttttgaaatcgaatttcacggtgttcgtgttgtgctatcgttagagtaaaaccttctatt |
560 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33685411 |
aacgtcttgttgttcgattctcatcctggtcttcaccggcttttgaaatcgaatttcacggtgttcgtgttgtgctgtcgttagagtaaaaccttctatt |
33685312 |
T |
|
| Q |
561 |
tctatttctttgatttttgttgtgatttgaattggtttt |
599 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33685311 |
tttatttctttgatttttgttgtgatttgaatcggtttt |
33685273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 33685886 - 33685825
Alignment:
| Q |
12 |
atgaaacaaatatgttattcgaattgggtggatatagtatgaaccatggcttttcaaataac |
73 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
33685886 |
atgaaacaaatatgttattcaaattgggtggatatagtaggaaccatggcttttcgaataac |
33685825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University