View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1942_low_10 (Length: 412)

Name: NF1942_low_10
Description: NF1942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1942_low_10
NF1942_low_10
[»] chr3 (1 HSPs)
chr3 (92-412)||(54136908-54137247)
[»] chr2 (1 HSPs)
chr2 (92-169)||(14660707-14660784)
[»] chr4 (2 HSPs)
chr4 (125-180)||(3046547-3046602)
chr4 (105-169)||(50679796-50679860)
[»] chr1 (3 HSPs)
chr1 (109-169)||(6492348-6492408)
chr1 (114-169)||(9661264-9661319)
chr1 (109-173)||(12880265-12880329)
[»] chr8 (1 HSPs)
chr8 (114-163)||(36746258-36746307)
[»] chr7 (2 HSPs)
chr7 (1-30)||(26734813-26734842)
chr7 (105-146)||(28606117-28606158)
[»] chr6 (1 HSPs)
chr6 (112-169)||(20805776-20805833)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 92 - 412
Target Start/End: Original strand, 54136908 - 54137247
Alignment:
Q  92 gacattttactagaaactattcaaaccaatttctcatttgaagcttcctttaaaaaatcttttgttaaaaagattatagcaagaagatacacctataaaa 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  54136908 gacattttactagaaactattcaaaccaatttctcatttgaagcttcctttaaaaaatcatttgttaaaaaaattatagcaagaagatacacctataaaa 54137007  T
Q  192 acatttttcaaa-------------------gtccattatctttttaaaagaatctaaaataacaaaagaaagtgatacaaaatttcaaatacttacttc 272  Q
    ||||||||||||                   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54137008 acatttttcaaaagagctatataataaaagggtccattatctttttaaaagaatctaaaataacaaaagaaagtgatacaaaatttcaaatacttacttc 54137107  T
Q  273 atcattatctgcaagtcccattaagttctctgtaatggttgcaaaaccaagtaagaaaatgagaaacaacagacatactagtatttggtattgagagaag 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54137108 atcattatctgcaagtcccattaagttctctgtaatggttgcaaaacaaagtaagaaaatgagaaacaacagacatagtagtatttggtattgagagaag 54137207  T
Q  373 aaaactgtaccagatggtttgatactattactatcctgtg 412  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  54137208 aaaactgtaccagatgatttgatactattactatcctgtg 54137247  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 14660707 - 14660784
Alignment:
Q  92 gacattttactagaaactattcaaaccaatttctcatttgaagcttcctttaaaaaatcttttgttaaaaagattata 169  Q
    |||||||||  | |||||||||||||| |||| ||||||||||||| ||||||||| |  ||||||||||| ||||||    
T  14660707 gacattttaagataaactattcaaaccgatttttcatttgaagctttctttaaaaacttatttgttaaaaaaattata 14660784  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 180
Target Start/End: Original strand, 3046547 - 3046602
Alignment:
Q  125 tcatttgaagcttcctttaaaaaatcttttgttaaaaagattatagcaagaagata 180  Q
    |||||||||| ||||||||||||||  ||||||||||| |||||||||| ||||||    
T  3046547 tcatttgaagtttcctttaaaaaattatttgttaaaaaaattatagcaaaaagata 3046602  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 50679860 - 50679796
Alignment:
Q  105 aaactattcaaaccaatttctcatttgaagcttcctttaaaaaatcttttgttaaaaagattata 169  Q
    ||||||||||||| ||||| ||||||||||||| | || |||| |  ||||||||||| ||||||    
T  50679860 aaactattcaaacaaatttttcatttgaagctttccttgaaaatttctttgttaaaaaaattata 50679796  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 6492408 - 6492348
Alignment:
Q  109 tattcaaaccaatttctcatttgaagcttcctttaaaaaatcttttgttaaaaagattata 169  Q
    ||||||||| ||||| |||||| |||||| | |||||||||| ||||||||||| ||||||    
T  6492408 tattcaaacaaatttttcattttaagctttccttaaaaaatcctttgttaaaaaaattata 6492348  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 9661264 - 9661319
Alignment:
Q  114 aaaccaatttctcatttgaagcttcctttaaaaaatcttttgttaaaaagattata 169  Q
    ||||||||||||||||||||| || |||||||| ||  ||||||||||| ||||||    
T  9661264 aaaccaatttctcatttgaagttttctttaaaatattctttgttaaaaatattata 9661319  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 12880329 - 12880265
Alignment:
Q  109 tattcaaaccaatttctcatttgaagcttcctttaaaaaatcttttgttaaaaagattatagcaa 173  Q
    ||||||||| ||||| ||||||||| ||| | ||||||| |  ||||||||||| ||||||||||    
T  12880329 tattcaaacaaatttttcatttgaaactttccttaaaaatttctttgttaaaaaaattatagcaa 12880265  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 36746307 - 36746258
Alignment:
Q  114 aaaccaatttctcatttgaagcttcctttaaaaaatcttttgttaaaaag 163  Q
    |||||||||||||||||||| ||| |||||||||||  ||| ||||||||    
T  36746307 aaaccaatttctcatttgaaactttctttaaaaaattcttttttaaaaag 36746258  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 26734813 - 26734842
Alignment:
Q  1 atttatcgtgaatttttagttaataattta 30  Q
    ||||||||||||||||||||||||||||||    
T  26734813 atttatcgtgaatttttagttaataattta 26734842  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 28606158 - 28606117
Alignment:
Q  105 aaactattcaaaccaatttctcatttgaagcttcctttaaaa 146  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||    
T  28606158 aaactattcaaacaaatttttcatttgaagctttctttaaaa 28606117  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 20805833 - 20805776
Alignment:
Q  112 tcaaaccaatttctcatttgaagcttcctttaaaaaatcttttgttaaaaagattata 169  Q
    |||||| ||||| ||||||||||||| | || |||||| |||||||||||| ||||||    
T  20805833 tcaaacaaatttttcatttgaagctttccttgaaaaattttttgttaaaaatattata 20805776  T

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