View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1942_low_12 (Length: 325)

Name: NF1942_low_12
Description: NF1942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1942_low_12
NF1942_low_12
[»] chr4 (10 HSPs)
chr4 (15-293)||(1856513-1856796)
chr4 (173-232)||(10032292-10032351)
chr4 (175-273)||(50348153-50348252)
chr4 (173-272)||(22536873-22536972)
chr4 (179-271)||(13078552-13078644)
chr4 (173-223)||(55203347-55203397)
chr4 (179-270)||(2515023-2515115)
chr4 (180-271)||(13074887-13074979)
chr4 (181-273)||(54448486-54448578)
chr4 (179-230)||(2515599-2515650)
[»] chr1 (5 HSPs)
chr1 (173-273)||(48990907-48991008)
chr1 (173-273)||(48985990-48986091)
chr1 (173-273)||(25492001-25492102)
chr1 (173-230)||(52433023-52433080)
chr1 (179-230)||(19880741-19880792)
[»] chr3 (3 HSPs)
chr3 (175-270)||(34373959-34374055)
chr3 (179-224)||(12772532-12772577)
chr3 (173-230)||(34374794-34374850)
[»] chr6 (3 HSPs)
chr6 (176-274)||(6356386-6356485)
chr6 (182-249)||(12257332-12257400)
chr6 (182-249)||(12258015-12258083)
[»] chr7 (6 HSPs)
chr7 (173-273)||(46169321-46169422)
chr7 (173-230)||(46164449-46164506)
chr7 (182-273)||(46582467-46582559)
chr7 (173-272)||(10092313-10092414)
chr7 (178-228)||(19059930-19059980)
chr7 (173-249)||(41097626-41097703)
[»] chr2 (5 HSPs)
chr2 (179-271)||(34227240-34227332)
chr2 (173-273)||(33669543-33669645)
chr2 (179-232)||(18259226-18259279)
chr2 (173-271)||(34226932-34227032)
chr2 (179-230)||(10257752-10257803)
[»] chr5 (6 HSPs)
chr5 (183-272)||(8740448-8740538)
chr5 (203-273)||(8740567-8740638)
chr5 (178-230)||(6596871-6596923)
chr5 (205-273)||(43450145-43450213)
chr5 (176-227)||(21632589-21632641)
chr5 (176-227)||(21640836-21640888)
[»] scaffold0060 (1 HSPs)
scaffold0060 (176-227)||(11163-11215)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 1856513 - 1856796
Alignment:
Q  15 gatcctgttattaagatatgaatgaacgatggcaattaagatcaacgacggtgcagtcggcggatgttagcaatgatgaaagggcaaaggaagagtttct 114  Q
    |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1856513 gatcctattattaagagatgaatgaacgatggcaattaagatgaacgacggtgcagtcgacggatgttagcaatgatgaaagggcaaaggaagagtttct 1856612  T
Q  115 gacggaagctgatgaaaagagagtaacgcacgaga-----acnnnnnnnattnnnnnnntacatgtttattttaaatctgaaccattgaatccttttttg 209  Q
    |||||||||||||||||||||||||||||||||||              |||       |||||||||||||||||||||||||||||||||||||||||    
T  1856613 gacggaagctgatgaaaagagagtaacgcacgagatttatttattttttattaaaaaaatacatgtttattttaaatctgaaccattgaatccttttttg 1856712  T
Q  210 ccacatgtcattcatccaagatctaaatggtataaatggaacatgtggtaaatggagcatacctagacaacttaaaacaaaaat 293  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  1856713 ccacatgtcattcatccaagacctaaatggtgtaaatggaacatgtggtaaatggagcatatctggacaacttaaaacaaaaat 1856796  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 10032292 - 10032351
Alignment:
Q  173 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaagatc 232  Q
    |||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  10032292 tgtttatttttaatctgaatcattgaatccttttttgtcacatgtcattcatccaagatc 10032351  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 273
Target Start/End: Original strand, 50348153 - 50348252
Alignment:
Q  175 tttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatggaacatgtggtaaatggagcatacct 273  Q
    ||||||| |||| |||||||||||||| ||||||  |||||||||||||||||| |  ||||||||  |||||| | |||||||||||||||||||||||    
T  50348153 tttatttaaaatatgaaccattgaatctttttttatcacatgtcattcatccaataccctaaatggagtaaatgaagcatgtggtaaatggagcatacct 50348252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 22536873 - 22536972
Alignment:
Q  173 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatggaacatgtggtaaatggagcatac 271  Q
    ||||||||||||||||||| ||||||||  |||||| ||||||||||||||||||| |  ||||||||  |||||||| ||| ||||||||| |||||||    
T  22536873 tgtttattttaaatctgaatcattgaat-tttttttaccacatgtcattcatccaacaccctaaatggggtaaatggagcatatggtaaatgaagcatac 22536971  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 13078552 - 13078644
Alignment:
Q  179 ttttaaatctgaaccattgaatccttttttgccacatgtcattcatccaagatctaaatggtataaatggaacatgtggtaaatggagcatac 271  Q
    |||||||||||||||||||||||  ||||||||||||||  ||||||| |  |||||||||  |||||||| || |  |||||||||| ||||    
T  13078552 ttttaaatctgaaccattgaatctatttttgccacatgtttttcatccgaattctaaatggactaaatggagcaagatgtaaatggagaatac 13078644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 55203397 - 55203347
Alignment:
Q  173 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattca 223  Q
    |||||||||| ||||||||||||||||||| ||| | ||||||||||||||    
T  55203397 tgtttatttttaatctgaaccattgaatccctttcttccacatgtcattca 55203347  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 270
Target Start/End: Complemental strand, 2515115 - 2515023
Alignment:
Q  179 ttttaaatctgaaccattgaatccttttttgccacatgtcattcatccaagat-ctaaatggtataaatggaacatgtggtaaatggagcata 270  Q
    |||||||||| |||  || |||| |||||||||| ||||||||||| |||||| ||||||||  |||||||||||    ||||||||||||||    
T  2515115 ttttaaatctcaactcttaaatctttttttgccatatgtcattcattcaagatcctaaatggactaaatggaacaatatgtaaatggagcata 2515023  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 13074979 - 13074887
Alignment:
Q  180 tttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatggaacatgtggtaaatggagcatac 271  Q
    ||||||||| || | ||||||| ||||||||||||||||  ||| |||||| |||||||||  |||||||| || |  |||||||||||||||    
T  13074979 tttaaatctcaatccttgaatctttttttgccacatgtctctcacccaagattctaaatggactaaatggagcaagatgtaaatggagcatac 13074887  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 54448486 - 54448578
Alignment:
Q  181 ttaaatctgaaccattgaatccttttttgccacatgtcattcatccaagatctaaatggtataaatggaacatgtggtaaatggagcatacct 273  Q
    |||||||| |||| ||||||  | |||||||| ||||| |||||||| || ||||||||  ||||||||  | | ||||||||||||||||||    
T  54448486 ttaaatctcaacccttgaataatgttttgccaaatgtctttcatccatgacctaaatggactaaatggaggaagaggtaaatggagcatacct 54448578  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 2515599 - 2515650
Alignment:
Q  179 ttttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga 230  Q
    |||||||||| ||||||||||||  ||||| ||| |||||||||||||||||    
T  2515599 ttttaaatctcaaccattgaatctatttttcccatatgtcattcatccaaga 2515650  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 48990907 - 48991008
Alignment:
Q  173 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatggaacatgtggtaaatggagcatac 271  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||  ||||||||  |||||||| |  ||||||||||||||||||    
T  48990907 tgtttatttttaatctgaaccattgaatccatttttgccacatgtcactcatccaagaccctaaatggggtaaatggagctggtggtaaatggagcatac 48991006  T
Q  272 ct 273  Q
    ||    
T  48991007 ct 48991008  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 48986091 - 48985990
Alignment:
Q  173 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatggaacatgtggtaaatggagcatac 271  Q
    |||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||||  |||||||   |||||||| |  ||||||||||||||||||    
T  48986091 tgtttatttttaatctgaatcattgaatccatttttgccacatgtcactcatccaagaccctaaatgaggtaaatggagctggtggtaaatggagcatac 48985992  T
Q  272 ct 273  Q
    ||    
T  48985991 ct 48985990  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 25492001 - 25492102
Alignment:
Q  173 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatggaacatgtggtaaatggagcatac 271  Q
    |||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||||  ||||||||  || |||||    ||||||||||||||||||    
T  25492001 tgtttatttttaatctgaaccattgaatccatttttgccacatatcactcatccaagaccctaaatggggtatatggagttggtggtaaatggagcatac 25492100  T
Q  272 ct 273  Q
    ||    
T  25492101 ct 25492102  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 52433080 - 52433023
Alignment:
Q  173 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga 230  Q
    |||||||||| ||||||||||||||||| | ||| |||||| ||||||||||||||||    
T  52433080 tgtttatttttaatctgaaccattgaattcatttgtgccacgtgtcattcatccaaga 52433023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 19880741 - 19880792
Alignment:
Q  179 ttttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga 230  Q
    |||| ||||| ||||||||||||| |||||||||| ||||| ||||||||||    
T  19880741 tttttaatcttaaccattgaatccatttttgccacttgtcagtcatccaaga 19880792  T

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Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 175 - 270
Target Start/End: Complemental strand, 34374055 - 34373959
Alignment:
Q  175 tttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatggaacatgtggtaaatggagcata 270  Q
    |||||||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||||||| | |||||||||||   ||||||||||||||||    
T  34374055 tttatttttaatctaaaccattgaatcattttttgccacatgtcattcatccaagattctaaattggataaatggaaccgatggtaaatggagcata 34373959  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 12772577 - 12772532
Alignment:
Q  179 ttttaaatctgaaccattgaatccttttttgccacatgtcattcat 224  Q
    |||| ||||| |||||| ||||||||||||||||||||||||||||    
T  12772577 tttttaatctaaaccatcgaatccttttttgccacatgtcattcat 12772532  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 34374794 - 34374850
Alignment:
Q  173 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga 230  Q
    |||||||||| |||||||||||||||||  |||||| |||| ||||||||||| ||||    
T  34374794 tgtttatttttaatctgaaccattgaat-atttttttccacgtgtcattcatctaaga 34374850  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 176 - 274
Target Start/End: Original strand, 6356386 - 6356485
Alignment:
Q  176 ttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaagatc-taaatggtataaatggaacatgtggtaaatggagcataccta 274  Q
    ||||||||||||||||| ||||||||  ||||| ||||||||||||||||||||| | ||||||   ||||||| |||||||||||||||||||||||||    
T  6356386 ttattttaaatctgaacaattgaatcgatttttaccacatgtcattcatccaagaccttaaatgtagtaaatgggacatgtggtaaatggagcataccta 6356485  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 12257400 - 12257332
Alignment:
Q  182 taaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatgga 249  Q
    ||||||| |||||||||||| ||||||||||| |||| |||||||||||  ||||||||| ||||||||    
T  12257400 taaatctcaaccattgaatctttttttgccacttgtctttcatccaagaccctaaatggtctaaatgga 12257332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 12258015 - 12258083
Alignment:
Q  182 taaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatgga 249  Q
    ||||||| ||||||| |||| ||||||||||| |||| ||||||||| |  ||||||||| ||||||||    
T  12258015 taaatctcaaccattaaatctttttttgccacttgtctttcatccaaaaccctaaatggtctaaatgga 12258083  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 46169321 - 46169422
Alignment:
Q  173 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatggaacatgtggtaaatggagcatac 271  Q
    |||||||||| |||||||| |||||||||| |||||||||||||||| ||||||||||  ||||||||  |||||||| |  ||||||||||||||||||    
T  46169321 tgtttatttttaatctgaatcattgaatccatttttgccacatgtcactcatccaagaccctaaatggggtaaatggagctggtggtaaatggagcatac 46169420  T
Q  272 ct 273  Q
    ||    
T  46169421 ct 46169422  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 230
Target Start/End: Complemental strand, 46164506 - 46164449
Alignment:
Q  173 tgtttattttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga 230  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||    
T  46164506 tgtttatttttaatctgaaccattgaatccatttttgccacatgtcactcatccaaga 46164449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 46582467 - 46582559
Alignment:
Q  182 taaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatggaacatgtggtaaatggagcatacct 273  Q
    ||||||| || ||||||||| ||||||||||| |||| |||||||||||  |||||||||||||||||| ||    |||||||||||||||||    
T  46582467 taaatctcaatcattgaatctttttttgccacttgtctttcatccaagaccctaaatggtataaatggagcaacatgtaaatggagcatacct 46582559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 272
Target Start/End: Original strand, 10092313 - 10092414
Alignment:
Q  173 tgtttattttaaatctgaaccattgaatccttttttg-ccacatgtcattcatccaagatc-taaatggtataaatggaacatgtggtaaatggagcata 270  Q
    |||||||||| ||||| ||||||| || | ||||||  ||||||||||||||||||||| | |||||||  |||||||| |   ||||||||||||||||    
T  10092313 tgtttatttttaatctcaaccattcaaacattttttttccacatgtcattcatccaagaccttaaatggggtaaatggagctgatggtaaatggagcata 10092412  T
Q  271 cc 272  Q
    ||    
T  10092413 cc 10092414  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 19059930 - 19059980
Alignment:
Q  178 attttaaatctgaaccattgaatccttttttgccacatgtcattcatccaa 228  Q
    ||||||||||| |||| ||||||  ||||| ||||||||||||||||||||    
T  19059930 attttaaatctcaacccttgaatattttttagccacatgtcattcatccaa 19059980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 41097626 - 41097703
Alignment:
Q  173 tgtttattttaaatctgaaccattgaatcctttttt-gccacatgtcattcatccaagatc-taaatggtataaatgga 249  Q
    |||||||||||| ||| ||||||| |||| |||||| | |||||||||||||||||||||| |||||||  ||||||||    
T  41097626 tgtttattttaa-tctaaaccatttaatcatttttttgtcacatgtcattcatccaagatcttaaatggggtaaatgga 41097703  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 34227240 - 34227332
Alignment:
Q  179 ttttaaatctgaaccattgaatccttttttgccacatgtcattcatccaagatctaaatggtataaatggaacatgtggtaaatggagcatac 271  Q
    |||||||||||||||||||| |  |||||| ||||||||||||||||||||  ||||||||  |||||||| ||||| |||||||||||||||    
T  34227240 ttttaaatctgaaccattgattttttttttaccacatgtcattcatccaagtcctaaatggactaaatggagcatgtagtaaatggagcatac 34227332  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 33669543 - 33669645
Alignment:
Q  173 tgtttattttaaa-tctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatggaacatgtggtaaatggagcata 270  Q
    ||||||||||||| | ||||||||||||| |||||||||||||||||||||||  ||||  |||||||   |||||||| ||||||||||||||| ||||    
T  33669543 tgtttattttaaaatatgaaccattgaattcttttttgccacatgtcattcatttaagaccctaaatgaactaaatggagcatgtggtaaatggaacata 33669642  T
Q  271 cct 273  Q
    |||    
T  33669643 cct 33669645  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 18259226 - 18259279
Alignment:
Q  179 ttttaaatctgaaccattgaatccttttttgccacatgtcattcatccaagatc 232  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  18259226 ttttaaatatgaaccattgaatctttttttgccacatgtcattcatccaagatc 18259279  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 34227032 - 34226932
Alignment:
Q  173 tgtttattttaaa-tctgaaccattgaatccttttttgccacatgtcattcatccaagat-ctaaatggtataaatggaacatgtggtaaatggagcata 270  Q
    ||||||||||||| | ||||||||| ||| ||||||| ||| ||||||||||| |||| | |||||||   ||||||||||||||||||||| || ||||    
T  34227032 tgtttattttaaaatttgaaccattaaattcttttttaccatatgtcattcattcaaggtcctaaatgaactaaatggaacatgtggtaaatagaacata 34226933  T
Q  271 c 271  Q
    |    
T  34226932 c 34226932  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 10257803 - 10257752
Alignment:
Q  179 ttttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga 230  Q
    |||||||||||||||||| |||  ||||||||||||||||||||||| ||||    
T  10257803 ttttaaatctgaaccatttaattattttttgccacatgtcattcatctaaga 10257752  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 8740538 - 8740448
Alignment:
Q  183 aaatctgaaccattgaatccttttttgccacatgtcattcatccaaga-tctaaatggtataaatggaacatgtggtaaatggagcatacc 272  Q
    |||||| |||||||||||  ||||| |||||||||||||||||||| |  ||||||||  |||||||| ||| |||||||| |||||||||    
T  8740538 aaatctcaaccattgaatgttttttggccacatgtcattcatccaataccctaaatggggtaaatggagcatatggtaaattgagcatacc 8740448  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 8740567 - 8740638
Alignment:
Q  203 ttttttgccacatgtcattcatccaagatc-taaatggtataaatggaacatgtggtaaatggagcatacct 273  Q
    ||||| |||||||||||||||||||||| | ||||||| ||||||||| ||| ||||||||| | |||||||    
T  8740567 tttttggccacatgtcattcatccaagaccttaaatgggataaatggagcatatggtaaatgaaacatacct 8740638  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 6596871 - 6596923
Alignment:
Q  178 attttaaatctgaaccattgaatccttttttgccacatgtcattcatccaaga 230  Q
    ||||||||||| |||| ||||||  ||||| ||||||||||||||||||||||    
T  6596871 attttaaatctcaacccttgaatattttttagccacatgtcattcatccaaga 6596923  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 43450145 - 43450213
Alignment:
Q  205 ttttgccacatgtcattcatccaagatctaaatggtataaatggaacatgtggtaaatggagcatacct 273  Q
    |||||||||||||| | ||||||| || |||||||  |||||||| |||  ||||||||||||||||||    
T  43450145 ttttgccacatgtcctccatccaaaatataaatggactaaatggagcattaggtaaatggagcatacct 43450213  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 21632641 - 21632589
Alignment:
Q  176 ttattttaaatctgaaccattgaatccttt-tttgccacatgtcattcatcca 227  Q
    ||||||| ||||||||||||||||| |||| ||| ||| ||||||||||||||    
T  21632641 ttatttttaatctgaaccattgaattctttatttaccagatgtcattcatcca 21632589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 21640888 - 21640836
Alignment:
Q  176 ttattttaaatctgaaccattgaatccttt-tttgccacatgtcattcatcca 227  Q
    ||||||| ||||||||||||||||| |||| ||| ||| ||||||||||||||    
T  21640888 ttatttttaatctgaaccattgaattctttatttaccagatgtcattcatcca 21640836  T

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Target: scaffold0060 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 11215 - 11163
Alignment:
Q  176 ttattttaaatctgaaccattgaatcctt-ttttgccacatgtcattcatcca 227  Q
    ||||||| ||||||||||||||||||||| |||| ||||||||||||||||||    
T  11215 ttatttttaatctgaaccattgaatcctttttttaccacatgtcattcatcca 11163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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