View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1942_low_15 (Length: 254)
Name: NF1942_low_15
Description: NF1942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1942_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 54137217 - 54137446
Alignment:
| Q |
1 |
ccagatgatttgatactattactatcctgtggctgctcattcttgtcttctaatttagtactttcaagttcgtgttcagaggatacccatttctgcaacg |
100 |
Q |
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| T |
54137217 |
ccagatgatttgatactattactatcctgtggctgctcattcttgtattctaatttagtactttcaagttcgtgttcagaggatacccatttctgcaacg |
54137316 |
T |
|
| Q |
101 |
tgaagtgtggttgtgtacctattgaatcatataaagtagtacatgttatgttacaaataggaatcataaaaaagcaagtgaaaacacagaatttaccatc |
200 |
Q |
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| T |
54137317 |
taaagtgtggttgtgtacctattgaatcatataaagtagtacatgttatgttacaaaaaggcatcataaaaaagcaagtgaaaacacagaatttaccatc |
54137416 |
T |
|
| Q |
201 |
ttcattttcggttatcttcaatgttgtagc |
230 |
Q |
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|||||||||||||||||||||| ||||||| |
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| T |
54137417 |
ttcattttcggttatcttcaatattgtagc |
54137446 |
T |
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