View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1942_low_4 (Length: 500)

Name: NF1942_low_4
Description: NF1942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1942_low_4
NF1942_low_4
[»] chr4 (13 HSPs)
chr4 (226-454)||(13250426-13250653)
chr4 (202-377)||(31767429-31767601)
chr4 (203-383)||(43287813-43287991)
chr4 (298-444)||(13010442-13010594)
chr4 (202-387)||(43472069-43472249)
chr4 (239-386)||(895446-895588)
chr4 (192-356)||(6667721-6667881)
chr4 (298-457)||(11913951-11914123)
chr4 (229-387)||(4747183-4747333)
chr4 (192-297)||(6671442-6671547)
chr4 (298-361)||(44643509-44643572)
chr4 (300-333)||(19888178-19888211)
chr4 (411-467)||(31767336-31767392)
[»] chr3 (10 HSPs)
chr3 (202-400)||(19929992-19930188)
chr3 (272-400)||(42253518-42253643)
chr3 (231-386)||(2353191-2353341)
chr3 (252-384)||(42256790-42256921)
chr3 (239-386)||(26445066-26445208)
chr3 (4-123)||(38257824-38257951)
chr3 (244-378)||(9372192-9372321)
chr3 (302-400)||(19935193-19935291)
chr3 (239-342)||(14658132-14658230)
chr3 (232-291)||(14654869-14654928)
[»] chr1 (11 HSPs)
chr1 (204-376)||(43254081-43254250)
chr1 (203-384)||(38825451-38825630)
chr1 (202-383)||(38828662-38828841)
chr1 (260-386)||(49387578-49387699)
chr1 (248-386)||(9111513-9111646)
chr1 (253-386)||(21501222-21501350)
chr1 (298-361)||(12141649-12141713)
chr1 (299-356)||(39197271-39197328)
chr1 (193-325)||(1953642-1953771)
chr1 (192-361)||(24981159-24981326)
chr1 (421-454)||(49387498-49387531)
[»] chr7 (10 HSPs)
chr7 (229-386)||(13815731-13815883)
chr7 (203-387)||(32352400-32352581)
chr7 (229-362)||(15569559-15569687)
chr7 (239-387)||(2609573-2609716)
chr7 (298-361)||(22301148-22301212)
chr7 (231-362)||(15169930-15170056)
chr7 (201-356)||(11673964-11674116)
chr7 (298-356)||(31210077-31210136)
chr7 (417-454)||(13815926-13815963)
chr7 (422-454)||(6109687-6109719)
[»] chr6 (9 HSPs)
chr6 (231-379)||(2936127-2936270)
chr6 (269-386)||(24044905-24045017)
chr6 (269-386)||(24041602-24041714)
chr6 (231-386)||(3835631-3835782)
chr6 (201-356)||(19697847-19698000)
chr6 (231-333)||(14579614-14579711)
chr6 (303-362)||(19973730-19973789)
chr6 (298-361)||(6591846-6591910)
chr6 (421-454)||(24041522-24041555)
[»] scaffold0028 (2 HSPs)
scaffold0028 (239-386)||(110124-110266)
scaffold0028 (239-361)||(127703-127820)
[»] chr2 (11 HSPs)
chr2 (229-297)||(27107296-27107364)
chr2 (260-380)||(27083068-27083183)
chr2 (298-375)||(10941409-10941485)
chr2 (298-375)||(10947278-10947354)
chr2 (192-387)||(2590454-2590647)
chr2 (298-386)||(21189458-21189548)
chr2 (201-356)||(18739113-18739266)
chr2 (310-375)||(10938048-10938112)
chr2 (421-454)||(10937954-10937987)
chr2 (421-454)||(10941315-10941348)
chr2 (421-454)||(10947184-10947217)
[»] chr8 (10 HSPs)
chr8 (299-439)||(38678742-38678887)
chr8 (201-386)||(1788870-1789054)
chr8 (298-387)||(21185292-21185382)
chr8 (323-419)||(38676896-38676997)
chr8 (392-454)||(609837-609899)
chr8 (391-444)||(22264492-22264545)
chr8 (298-361)||(17028411-17028475)
chr8 (298-361)||(17558847-17558911)
chr8 (298-361)||(39655696-39655760)
chr8 (300-362)||(33940438-33940500)
[»] chr5 (2 HSPs)
chr5 (239-356)||(13291956-13292068)
chr5 (299-386)||(39292156-39292244)
[»] scaffold0933 (2 HSPs)
scaffold0933 (229-333)||(1071-1169)
scaffold0933 (301-360)||(804-863)
[»] scaffold0216 (1 HSPs)
scaffold0216 (239-290)||(12116-12167)
[»] scaffold0014 (1 HSPs)
scaffold0014 (298-356)||(82678-82737)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 226 - 454
Target Start/End: Complemental strand, 13250653 - 13250426
Alignment:
Q  226 gatagattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaa 325  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||  ||    ||||||||||||||||||| |||||||    
T  13250653 gatagattcaagctgttctgtcaccactgatgtgattcatatcagggaagaacatattgtatcctaaga----aggatatgcgcttatgaggtggataaa 13250558  T
Q  326 tccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcaggtc--gatttcttgtttgattacttcaacgttaccgatgtc 423  Q
    || ||||| | | |||||||||||||||||||||||| ||||||||||||||||||||||||  ||||| ||||||| |||||||| ||||| |||||||    
T  13250557 tctttaaggagagtgactttgtcacgcctcatgttatataacggcttactattttgcaggtcatgattttttgtttgtttacttcaccgttatcgatgtc 13250458  T
Q  424 aaatcaccgcaatttcaagaa-atataagttt 454  Q
    ||||||||||||||| ||||| ||||||||||    
T  13250457 aaatcaccgcaattttaagaacatataagttt 13250426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 202 - 377
Target Start/End: Complemental strand, 31767601 - 31767429
Alignment:
Q  202 tgggttacatctcctgctatctttg--atagattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggaga 299  Q
    |||||||||||||||||||| ||||  ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |     ||    
T  31767601 tgggttacatctcctgctatgtttgtgatagattcaagttgttctgtcacctctgatgtgattcatatcagggaagaacatgttgtatcctag-----ga 31767507  T
Q  300 ggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactat 377  Q
    ||||||| |||||||||||||||||||||||||| | | ||| |||||||||||||||||||  |||||| |||||||    
T  31767506 ggatatgtgcttatgaggcggataaatccttaaggatagtgattttgtcacgcctcatgttagttaacggtttactat 31767429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 203 - 383
Target Start/End: Original strand, 43287813 - 43287991
Alignment:
Q  203 gggttacatctcctgctatctttga--tagattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagag 300  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||  | |||||| ||||||||||||||      |     
T  43287813 gggttacatctcctgctatctttgagatagattcaagctgttctgtcacctctgatgtgattcatatctgagaagaatatgttgtatcctgg-----aaa 43287907  T
Q  301 gatatgcgcttatgaggcggataaatcc-ttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgca 383  Q
    ||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||  ||||| |||||||| ||||    
T  43287908 gatatgcgcttatgaggcgaataaatcctttaaggacagtgactttgtcacgcctcatgttattcaacggtttactattgtgca 43287991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 298 - 444
Target Start/End: Complemental strand, 13010594 - 13010442
Alignment:
Q  298 gaggatatgcgcttatgaggcggataaa-tccttaagcacaatgactttgtcacgcctcatgttatgtaac---ggcttactattttgcaggtc--gatt 391  Q
    |||||||||||||||||||||||||||| |||| ||| ||| ||||| |||||||||||| ||||| |||    |||||||||| |||||||||  || |    
T  13010594 gaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttatataaatgtggcttactatgttgcaggtcatgaat 13010495  T
Q  392 tcttgtttgattacttcaacgttaccgatgtcaaatcaccgcaatttcaagaa 444  Q
    ||||||||| |||||||| |||||||||  |||||||||||||||||||||||    
T  13010494 tcttgtttgcttacttcaccgttaccgacttcaaatcaccgcaatttcaagaa 13010442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 202 - 387
Target Start/End: Original strand, 43472069 - 43472249
Alignment:
Q  202 tgggttacatctcctgctatcttt-gatagattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagag 300  Q
    |||||||||||| ||||||| ||  ||||||||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||| |     |||    
T  43472069 tgggttacatctgctgctattttgagatagattcaagctgttctgtcacctctgatgtgatt-agatctgggaagaacatgttgtatcctag-----gag 43472162  T
Q  301 gatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcaggtc 387  Q
    |||  | |||||||||||| |||||||| |||| ||| ||| |||||||| |||||||||||  ||||| |||||| | ||||||||    
T  43472163 gatgcgtgcttatgaggcgaataaatccctaaggacagtgattttgtcacacctcatgttattcaacggtttactactgtgcaggtc 43472249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 895446 - 895588
Alignment:
Q  239 tgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggat-aaatccttaagcaca 337  Q
    |||||| ||||||||||| |||||||||| |||||||||| | |||||||||||     ||||||||||||||||||||||||| ||||||| ||| |||    
T  895446 tgttctatcacctctgatatgattcatattagggaagaac-ttttgtatcctgg-----gaggatatgcgcttatgaggcggataaaatcctcaaggaca 895539  T
Q  338 atgactttgtcacgcctcatgttatgtaacggcttactattttgcaggt 386  Q
     ||||| ||||||| |||| ||||  |||| | ||||||||||||||||    
T  895540 gtgactatgtcacgactcaggttagataacagtttactattttgcaggt 895588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 192 - 356
Target Start/End: Complemental strand, 6667881 - 6667721
Alignment:
Q  192 attgagttcctgggttacatctcctgctatctttgatagattcaagctgttctgtcacct-ctgatgtgattcatatgagggaagaacatgttgtatcct 290  Q
    ||||| ||| |||||||||||||||| |||||  |||| |||  |||||||||||||||| | | | |||||||||   ||||||||| |||||||||||    
T  6667881 attgaattcatgggttacatctcctgatatctgagatatatttgagctgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcct 6667783  T
Q  291 gggaggagaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctca 356  Q
    ||     ||||||||||||||||||||||||| ||||||| ||| ||| ||||| ||||||||||||    
T  6667782 gg-----gaggatatgcgcttatgaggcggataaaatcctcaagaacagtgactatgtcacgcctca 6667721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 457
Target Start/End: Complemental strand, 11914123 - 11913951
Alignment:
Q  298 gaggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcaggtc---------- 387  Q
    |||||||||| |||||||| |||||||||||||||| | |||||||| ||||||||| | ||||| |||||| | ||||||||| |||||              
T  11914123 gaggatatgcacttatgagacggataaatccttaaggataatgacttcgtcacgccttaggttatttaacggttgactattttgtaggtcatcgatgttc 11914024  T
Q  388 --gatttcttgtttgattacttcaacgttaccgatgtcaaatcaccgcaatttcaagaa-atataagtttcct 457  Q
      ||||| ||||||| |||||||| ||||| |||  |||||||||| |||||||||||| | |||||||||||    
T  11914023 atgattttttgtttgtttacttcatcgttatcgacttcaaatcaccacaatttcaagaacagataagtttcct 11913951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 387
Target Start/End: Original strand, 4747183 - 4747333
Alignment:
Q  229 agattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatcc 328  Q
    ||||||||| |||||||||||||  ||| |||||||||  || ||||||| ||||||||| ||||||||     ||| |||||||||||   || |||||    
T  4747183 agattcaagttgttctgtcacct--gatatgattcatacaagcgaagaacctgttgtatcttgggagga-----tatacgcttatgaggtccatgaatcc 4747275  T
Q  329 ttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcaggtc 387  Q
    ||||| ||| |||||| |||||||||||  |||| ||| || ||||| |||||||||||    
T  4747276 ttaag-acagtgacttcgtcacgcctcagattatttaatggtttactgttttgcaggtc 4747333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 297
Target Start/End: Complemental strand, 6671547 - 6671442
Alignment:
Q  192 attgagttcctgggttacatctcctgctatctttgatagattcaagctgttctgtcacct-ctgatgtgattcatatgagggaagaacatgttgtatcct 290  Q
    ||||| ||| |||||||||||||||| |||||  |||| |||  |||||||||||||||| | | | |||||||||   ||||||||| |||||||||||    
T  6671547 attgaattcatgggttacatctcctgatatctgagatatatttgagctgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcct 6671449  T
Q  291 gggagga 297  Q
    |||||||    
T  6671448 gggagga 6671442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 44643509 - 44643572
Alignment:
Q  298 gaggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgtta 361  Q
    |||||||||||||||||||||||||| |  || ||| ||| ||||| |||||||||||| ||||    
T  44643509 gaggatatgcgcttatgaggcggatagaatctgaaggacagtgactatgtcacgcctcaggtta 44643572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 333
Target Start/End: Complemental strand, 19888211 - 19888178
Alignment:
Q  300 ggatatgcgcttatgaggcggataaatccttaag 333  Q
    |||| |||||||||||||||||||||||||||||    
T  19888211 ggatttgcgcttatgaggcggataaatccttaag 19888178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 467
Target Start/End: Complemental strand, 31767392 - 31767336
Alignment:
Q  411 cgttaccgatgtcaaatcaccgcaatttcaagaaatataagtttcctggttacccct 467  Q
    |||||||||  |||||| ||||||||||||||||| |||||||| || |||| ||||    
T  31767392 cgttaccgagttcaaattaccgcaatttcaagaaagataagtttacttgttatccct 31767336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 202 - 400
Target Start/End: Complemental strand, 19930188 - 19929992
Alignment:
Q  202 tgggttacatctcctgctatctttga--tagattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggaga 299  Q
    ||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||||| | ||||||||||||||||||| ||||     ||    
T  19930188 tgggttacatctcctgctatctttgagatagattcaagttgttctatcacctctgatgtgattcatctcagggaagaacatgttgtat-ctgg-----ga 19930095  T
Q  300 ggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcaggtc--gatttcttgt 397  Q
    |||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||||| |||||||||||||||||  ||||||||||    
T  19930094 ggatatgcgcttatgaggcggataaatccttaaggacggtgactttgtcacgcctcatgttatataacggtttactattttgcaggtcatgatttcttgt 19929995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 272 - 400
Target Start/End: Complemental strand, 42253643 - 42253518
Alignment:
Q  272 gaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggct 371  Q
    ||||||||||||||||||| |     ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||| |||||| |    
T  42253643 gaagaacatgttgtatccttg-----gaggatatgcgcttatgaggcgggtaaatccttaaggacagtgactttgtcacgcctcatgttatataacggtt 42253549  T
Q  372 tactattttgcaggtc--gatttcttgtttg 400  Q
    ||||||||||||||||  |||||||||||||    
T  42253548 tactattttgcaggtcatgatttcttgtttg 42253518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 231 - 386
Target Start/End: Original strand, 2353191 - 2353341
Alignment:
Q  231 attcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatcctt 330  Q
    ||||||| ||||||||||||||| || |||||||||| || ||||||| ||||||||||||||||||     || || ||||||||||||||||||||||    
T  2353191 attcaagttgttctgtcacctcttatatgattcatatcagagaagaacctgttgtatcctgggagga-----taagcacttatgaggcggataaatcctt 2353285  T
Q  331 aagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcaggt 386  Q
    ||| ||||||||||  ||| |||||| ||||| |||||| ||| ||||||||||||    
T  2353286 aaggacaatgacttcatcatgcctcaggttatataacggtttattattttgcaggt 2353341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 252 - 384
Target Start/End: Complemental strand, 42256921 - 42256790
Alignment:
Q  252 ctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacg 351  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| | |  |||||||||||||| | ||||||||||||||  ||| ||| |||||||||    
T  42256921 ctgatgtgattcatatcagggaagaatatgttgtatcctgggagtatat-atatgcgcttatgaagaggataaatccttaaagacagtgattttgtcacg 42256823  T
Q  352 cctcatgttatgtaacggcttactattttgcag 384  Q
    ||||||||||| |||||  |||||| |||||||    
T  42256822 cctcatgttatataacgatttactagtttgcag 42256790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 239 - 386
Target Start/End: Complemental strand, 26445208 - 26445066
Alignment:
Q  239 tgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatccttaagcacaa 338  Q
    |||| |||| |||||||| |||||||||| |||||||||||||||||||| ||     | ||||||| || |||||||||||||||||||||||| |||     
T  26445208 tgttatgtcgcctctgatatgattcatatcagggaagaacatgttgtatcttg-----acaggatatacgattatgaggcggataaatccttaaggacag 26445114  T
Q  339 tgactttgtcacgcctcatgttatgtaacggcttactattttgcaggt 386  Q
    ||||||||||| |||||||||||| || | | ||| ||||||||||||    
T  26445113 tgactttgtcatgcctcatgttatatatccgtttattattttgcaggt 26445066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 38257951 - 38257824
Alignment:
Q  4 tccacgtttaatattttgttcacatgccttacttgcttatttttaggaaccactcaaccttcctattcaactattccatgcctatttatccc-------- 95  Q
    |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||  |||||| ||  ||||||||||||||||||||            
T  38257951 tccacgtttattattttcttcacatgccttacttgcttaattttaggaaccactcaaccaccctatttaatcattccatgcctatttatcccttaaaaaa 38257852  T
Q  96 gtgtatgtataaaagtgatcagtagcac 123  Q
    |||||||||||||||||||| |||||||    
T  38257851 gtgtatgtataaaagtgatcggtagcac 38257824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 244 - 378
Target Start/End: Complemental strand, 9372321 - 9372192
Alignment:
Q  244 tgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatccttaagcacaatgact 343  Q
    |||||||||| || |||||||||| ||||| |||| ||||||||||||||| ||     ||||||||||||||||| ||||||||||||| ||| |||||    
T  9372321 tgtcacctctcatatgattcatatcagggatgaacctgttgtatcctgggacga-----tatgcgcttatgaggcgaataaatccttaaggacagtgact 9372227  T
Q  344 ttgtcacgcctcatgttatgtaacggcttactatt 378  Q
    | |||| |||||| ||||| |||||| ||||||||    
T  9372226 tcgtcatgcctcaggttatttaacggtttactatt 9372192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 302 - 400
Target Start/End: Complemental strand, 19935291 - 19935193
Alignment:
Q  302 atatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcaggtc--gatttcttgttt 399  Q
    |||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| |||  |||||| ||||||||||||| |||  ||||||||||||    
T  19935291 atatgcgcttatgaggaggataaatccttaaggacagtgactttgtcacgcctcatatta--taacggtttactattttgcacgtcatgatttcttgttt 19935194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 342
Target Start/End: Original strand, 14658132 - 14658230
Alignment:
Q  239 tgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatccttaagcacaa 338  Q
    |||||||||||||||||  |||||||| | || ||||||  |||||||||||||      ||||||||||||||||| || |||||||||||||| ||||    
T  14658132 tgttctgtcacctctgacatgattcatgttagagaagaatttgttgtatcctgg-----aaggatatgcgcttatgatgcagataaatccttaaggacaa 14658226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 14654869 - 14654928
Alignment:
Q  232 ttcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctg 291  Q
    |||||| |||||||||||||||||  |||||||| | || ||||||| ||||||||||||    
T  14654869 ttcaagttgttctgtcacctctgacatgattcatgtcagagaagaacctgttgtatcctg 14654928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 204 - 376
Target Start/End: Original strand, 43254081 - 43254250
Alignment:
Q  204 ggttacatctcctgctatctttga--tagattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagagg 301  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||||     ||||    
T  43254081 ggttacatctcctgctatctttgagatagattcaagttgttctgtcacctctgatatgattcatatatgggaagaacatgttgtatcctgg-----gagg 43254175  T
Q  302 atatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttacta 376  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||  ||||| ||||||    
T  43254176 atatgcgcttatgaggcgaataaatccttaaggacagtgactttgtcacgcctcatgttattcaacggtttacta 43254250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 203 - 384
Target Start/End: Complemental strand, 38825630 - 38825451
Alignment:
Q  203 gggttacatctcctgctatctttga--tagattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagag 300  Q
    ||||||||||| ||| |||||||||  || ||||||| ||||||| ||||| |||| |||||||||  || ||||||| ||||||||||||||     ||    
T  38825630 gggttacatcttctgttatctttgagataaattcaagttgttctgccacctttgatatgattcatagcagagaagaacttgttgtatcctggg-----ag 38825536  T
Q  301 gatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcag 384  Q
    |||||||| |||||||| |||| ||||||||||| ||| |||||| ||||| ||||| | ||||||| |||||||||||||||||    
T  38825535 gatatgcgtttatgaggaggataaaatccttaaggacagtgacttcgtcacacctcaagctatgtaatggcttactattttgcag 38825451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 202 - 383
Target Start/End: Complemental strand, 38828841 - 38828662
Alignment:
Q  202 tgggttacatctcctgctatcttt--gatagattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggaga 299  Q
    |||||||||||| ||  |||||||  |||| ||||||| ||||||| || ||||||| |||||||||  |||||||||| |||| |||||||||| ||      
T  38828841 tgggttacatcttctcttatcttttagataaattcaagttgttctgccaactctgatatgattcatagtagggaagaacttgttttatcctgggaaga-- 38828744  T
Q  300 ggatatgcgcttatgaggcggataaa-tccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgca 383  Q
       |||| |||||| ||||||||||| |||||||| | | |||||| ||||||||||| ||||||||||||||||||||||||||    
T  38828743 ---tatgagcttataaggcggataaaatccttaaggatagtgacttcgtcacgcctcaagttatgtaacggcttactattttgca 38828662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 260 - 386
Target Start/End: Complemental strand, 49387699 - 49387578
Alignment:
Q  260 attcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgt 359  Q
    ||||| || |||||||||||||||||||||||||||||     ||||||||||| ||||| |||||||||||||  || |||||||||||||||||||||    
T  49387699 attcacatcagggaagaacatgttgtatcctgggagga-----tatgcgcttataaggcgaataaatccttaaggccagtgactttgtcacgcctcatgt 49387605  T
Q  360 tatgtaacggcttactattttgcaggt 386  Q
    ||| ||| || ||||| ||| ||||||    
T  49387604 tatataatggattactgtttggcaggt 49387578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 386
Target Start/End: Complemental strand, 9111646 - 9111513
Alignment:
Q  248 acctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaa-tccttaagcacaatgactttg 346  Q
    ||||||||| ||||| |||| || ||||||| ||||||||||||||| ||     ||||||||||||||||||||||| |||| ||| ||| ||||| ||    
T  9111646 acctctgatatgatttatatcagtgaagaac-tgttgtatcctgggaaga-----tatgcgcttatgaggcggataaaatcctcaaggacagtgactatg 9111553  T
Q  347 tcacgcctcatgttatgtaacggcttactattttgcaggt 386  Q
    ||||||||||  |||| |||| | ||||||||||||||||    
T  9111552 tcacgcctcagattatataacagtttactattttgcaggt 9111513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 386
Target Start/End: Complemental strand, 21501350 - 21501222
Alignment:
Q  253 tgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgc 352  Q
    |||| ||||| |||| || ||||||||||||||||||| ||||||     ||| | |||||||| |||||||||||||||  | |  |||||||||||||    
T  21501350 tgatatgatttatattagagaagaacatgttgtatcctaggagga-----tatacacttatgagacggataaatccttaaagatagcgactttgtcacgc 21501256  T
Q  353 ctcatgttatgtaacggcttactattttgcaggt 386  Q
    ||||| |||| ||||   ||| ||||||||||||    
T  21501255 ctcatattatataactatttattattttgcaggt 21501222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 12141713 - 12141649
Alignment:
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatgtta 361  Q
    ||||||||||||||||||||||||| ||||||| ||| ||| ||||| |||||||||||| ||||    
T  12141713 gaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggtta 12141649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 356
Target Start/End: Original strand, 39197271 - 39197328
Alignment:
Q  299 aggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctca 356  Q
    |||||||||||||||||||| |||||||||||||  |||  ||||| |||||||||||    
T  39197271 aggatatgcgcttatgaggcagataaatccttaaatacagcgacttcgtcacgcctca 39197328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 325
Target Start/End: Original strand, 1953642 - 1953771
Alignment:
Q  193 ttgagttcctgggttacatctcctgctatctttg--atagattcaagctgttctgtcacctct-gatgtgattcatatgagggaagaacatgttgtatcc 289  Q
    ||||||| |||||||||||||||||  |||||||  ||| |||  || ||||||||||||||  | | |||||||||  |||||||||| ||||||||||    
T  1953642 ttgagtttctgggttacatctcctgacatctttgtgataaatttgagttgttctgtcacctcccgttatgattcataacagggaagaac-tgttgtatcc 1953740  T
Q  290 tgggaggagaggatatgcgcttatgaggcggataaa 325  Q
    ||||||||     ||| |||||||||||| ||||||    
T  1953741 tgggagga-----tattcgcttatgaggcagataaa 1953771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 361
Target Start/End: Complemental strand, 24981326 - 24981159
Alignment:
Q  192 attgagttcctgggttacatctcctgctatctttga--tagattcaagctgttctgtcacctctgatg-tgattcatatgagggaagaacatgttgtatc 288  Q
    |||||||| ||| ||||||||||||| |||||||||  || |||  || |||||| ||| ||| | |  |||||||||   ||||||||| |||||||||    
T  24981326 attgagtttctgtgttacatctcctgatatctttgagataaatttgagttgttctatcatctccggttatgattcataacggggaagaac-tgttgtatc 24981228  T
Q  289 ctgggaggagaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatgtta 361  Q
    |||||     |||||||| ||||||||||||||| ||||||| ||| ||  ||||| |||||||||||| ||||    
T  24981227 ctggg-----aggatatgtgcttatgaggcggataaaatcctcaaggacgctgactatgtcacgcctcaggtta 24981159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 454
Target Start/End: Complemental strand, 49387531 - 49387498
Alignment:
Q  421 gtcaaatcaccgcaatttcaagaaatataagttt 454  Q
    ||||||||||||||||||||||||| ||||||||    
T  49387531 gtcaaatcaccgcaatttcaagaaagataagttt 49387498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 229 - 386
Target Start/End: Original strand, 13815731 - 13815883
Alignment:
Q  229 agattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatcc 328  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||     || ||||||||||||||||||| ||||||||    
T  13815731 agattcaagctgttctgtcacctctgatgtgattcacattagggaagaacatgttgtatcctgg-----gaagatatgcgcttatgaggcgaataaatcc 13815825  T
Q  329 ttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcaggt 386  Q
    ||||| ||| |||||||||||||||||||||||| ||| || ||||| ||| ||||||    
T  13815826 ttaaggacagtgactttgtcacgcctcatgttatataatggattactgtttggcaggt 13815883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 203 - 387
Target Start/End: Complemental strand, 32352581 - 32352400
Alignment:
Q  203 gggttacatctcctgctatctttga--tagattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagag 300  Q
    |||||||||||||||||||||| ||  |||||| |||||||||||||||||||||||||||||||||  | |||||| ||||||| |||||||||||       
T  32352581 gggttacatctcctgctatcttagagatagatttaagctgttctgtcacctctgatgtgattcatatctgagaagaatatgttgtgtcctgggagga--- 32352485  T
Q  301 gatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcaggtc 387  Q
      ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| ||||||  ||||| |||||| | ||||||||    
T  32352484 --tatgcgcttatgaggcgaataaatccttaaggacagtgactttgtcacgcctcgtgttattcaacggtttactagtgtgcaggtc 32352400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 229 - 362
Target Start/End: Original strand, 15569559 - 15569687
Alignment:
Q  229 agattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatcc 328  Q
    |||||| || |||||||||||||||||| |||||||||| || ||||||| |||||||||||||     ||||||||| |||||||||||||||||||||    
T  15569559 agattcgagttgttctgtcacctctgatatgattcatatcagagaagaacctgttgtatcctgg-----gaggatatgtgcttatgaggcggataaatcc 15569653  T
Q  329 ttaagcacaatgactttgtcacgcctcatgttat 362  Q
     |||| ||| |||||||||||||||||| |||||    
T  15569654 ctaaggacagtgactttgtcacgcctcaggttat 15569687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 239 - 387
Target Start/End: Complemental strand, 2609716 - 2609573
Alignment:
Q  239 tgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatccttaagcacaa 338  Q
    ||||||||||| |||||| |||||||||| || |||||||||||||||||||     | ||||||||||||||||||| | ||||||| |||||| | |     
T  2609716 tgttctgtcacatctgatatgattcatatcagagaagaacatgttgtatcct-----gcgaggatatgcgcttatgagacagataaatacttaaggatag 2609622  T
Q  339 tgactttgtcacgcctcatgttatgtaacggcttactattttgcaggtc 387  Q
    |||||| ||||||||||| ||||| ||| ||||||||||||||||||||    
T  2609621 tgacttcgtcacgcctcaggttatataaaggcttactattttgcaggtc 2609573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 22301212 - 22301148
Alignment:
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatgtta 361  Q
    ||||||||||||||||||||||||| ||||||| ||| ||| ||||| |||||||||||| ||||    
T  22301212 gaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggtta 22301148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 362
Target Start/End: Original strand, 15169930 - 15170056
Alignment:
Q  231 attcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatcctt 330  Q
    ||||||| |||||||||| ||||||  |||||||| | || ||||||| |||||||||||     | ||||||||||| ||||||||| |||||||  ||    
T  15169930 attcaagttgttctgtcatctctgacatgattcatgttagagaagaacctgttgtatcct-----gtgaggatatgcgtttatgaggctgataaattttt 15170024  T
Q  331 aagcacaatgactttgtcacgcctcatgttat 362  Q
    ||| ||| ||||||  ||||| |||| |||||    
T  15170025 aaggacagtgacttcatcacgtctcaggttat 15170056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 356
Target Start/End: Original strand, 11673964 - 11674116
Alignment:
Q  201 ctgggttacatctcctgctatctttga--tagattcaagctgttctgtcacctctgatg-tgattcatatgagggaagaacatgttgtatcctgggagga 297  Q
    |||||||||||||| || |||||||||  || |||  || |||||||||||||| |||  |||||||||   ||||| ||| |||||||||||||||||     
T  11673964 ctgggttacatctcatgatatctttgagataaatttgagttgttctgtcacctccgattatgattcataac-gggaacaac-tgttgtatcctgggagg- 11674060  T
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctca 356  Q
        ||||||||||||||||||||| ||||||| ||| ||| ||||| |||||| |||||    
T  11674061 ----atatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacacctca 11674116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 31210136 - 31210077
Alignment:
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctca 356  Q
    |||||||||| |||||||||||||| ||||||| ||| ||| ||||| ||||||||||||    
T  31210136 gaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 31210077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 454
Target Start/End: Original strand, 13815926 - 13815963
Alignment:
Q  417 cgatgtcaaatcaccgcaatttcaagaaatataagttt 454  Q
    ||| ||||||||||||||||||||||||| ||||||||    
T  13815926 cgacgtcaaatcaccgcaatttcaagaaagataagttt 13815963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 454
Target Start/End: Original strand, 6109687 - 6109719
Alignment:
Q  422 tcaaatcaccgcaatttcaagaaatataagttt 454  Q
    |||||||||||||||||||||||| ||||||||    
T  6109687 tcaaatcaccgcaatttcaagaaagataagttt 6109719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 231 - 379
Target Start/End: Complemental strand, 2936270 - 2936127
Alignment:
Q  231 attcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatcctt 330  Q
    |||| ||||||||||||||||||||||||||| |||| || ||||||||||| ||||| ||     | | ||||||||||||||||||||||||||||||    
T  2936270 attcgagctgttctgtcacctctgatgtgatttatatcagagaagaacatgtggtatcttg-----aaaagatatgcgcttatgaggcggataaatcctt 2936176  T
Q  331 aagcacaatgactttgtcacgcctcatgttatgtaacggcttactattt 379  Q
    ||| ||| |||||| ||||| ||||||||||| |||||| |||||||||    
T  2936175 aaggacagtgacttcgtcacacctcatgttatataacggtttactattt 2936127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 269 - 386
Target Start/End: Complemental strand, 24045017 - 24044905
Alignment:
Q  269 agggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacg 368  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||| |    
T  24045017 agggaagaacatgttgtatcctgggagga-----tatgcgcttatgaggcgaataaatccttaaggacagtgactttgtcacgcctcatgttatataatg 24044923  T
Q  369 gcttactattttgcaggt 386  Q
    | ||||| ||| ||||||    
T  24044922 gattactgtttggcaggt 24044905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 386
Target Start/End: Complemental strand, 24041714 - 24041602
Alignment:
Q  269 agggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacg 368  Q
    |||||||||||||||||||||| |     |||||||||||||||||||||| |||||| |||||  ||| |||||||||||||||| ||||||| ||| |    
T  24041714 agggaagaacatgttgtatcctag-----gaggatatgcgcttatgaggcgaataaattcttaaagacagtgactttgtcacgccttatgttatataatg 24041620  T
Q  369 gcttactattttgcaggt 386  Q
    | ||||| ||| ||||||    
T  24041619 gattactgtttggcaggt 24041602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 231 - 386
Target Start/End: Complemental strand, 3835782 - 3835631
Alignment:
Q  231 attcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatcctt 330  Q
    ||||||| |||||||||||||||||| ||||| |||| || ||||||  |||||||||||     |||||||||||||||||||||| | ||||||||||    
T  3835782 attcaagttgttctgtcacctctgatatgatttatatcagagaagaatttgttgtatcct-----gagaggatatgcgcttatgaggtgaataaatcctt 3835688  T
Q  331 aagcacaatgactttgtcacgcctcatg-ttatgtaacggcttactattttgcaggt 386  Q
    ||| ||  |||  || |||| ||||||| ||||| || || ||||| ||||||||||    
T  3835687 aaggacggtgatcttatcacacctcatgtttatgcaatggtttactgttttgcaggt 3835631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 201 - 356
Target Start/End: Complemental strand, 19698000 - 19697847
Alignment:
Q  201 ctgggttacatctcctgctatctttga--tagattcaagctgttctgtcacctctgatg-tgattcatatgagggaagaacatgttgtatcctgggagga 297  Q
    |||||||||||||| || |||||||||  || |||  || |||||||||||||| |||  |||||||||   ||||||||| ||||||||||||||||||    
T  19698000 ctgggttacatctcatgatatctttgagataaatttgagttgttctgtcacctccgattatgattcataacggggaagaac-tgttgtatcctgggagga 19697902  T
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctca 356  Q
         |||||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||    
T  19697901 -----tatgcgcttatgaggcggataaaatcctcaaggacaatgactatgtcacgcctca 19697847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 333
Target Start/End: Original strand, 14579614 - 14579711
Alignment:
Q  231 attcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatcctt 330  Q
    ||||||| ||||||||||||||| |  |||||||| | || ||||||| ||||||||||||     ||||||||| ||||||||||||||||||||||||    
T  14579614 attcaagttgttctgtcacctcttacatgattcatgtcagagaagaacctgttgtatcctg-----agaggatattcgcttatgaggcggataaatcctt 14579708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 19973730 - 19973789
Alignment:
Q  303 tatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttat 362  Q
    ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |||||    
T  19973730 tatgcgcttatgaggcggataaatctttaaggacagtgactttgtcacgcctcaggttat 19973789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 6591910 - 6591846
Alignment:
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatgtta 361  Q
    ||||||||||||||||||||||||| ||||||| ||| ||| |||||  ||||||||||| ||||    
T  6591910 gaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactacgtcacgcctcaggtta 6591846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 454
Target Start/End: Complemental strand, 24041555 - 24041522
Alignment:
Q  421 gtcaaatcaccgcaatttcaagaaatataagttt 454  Q
    ||||||||||||||||||||||||| ||||||||    
T  24041555 gtcaaatcaccgcaatttcaagaaagataagttt 24041522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 386
Target Start/End: Original strand, 110124 - 110266
Alignment:
Q  239 tgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaa-tccttaagcaca 337  Q
    |||||||||||||||||  |||||||||| || ||||||| ||||||||| ||||||||     |||||| |||||||||||||||| |||| ||| |||    
T  110124 tgttctgtcacctctgacatgattcatatcagcgaagaac-tgttgtatcttgggagga-----tatgcgtttatgaggcggataaaatcctcaaggaca 110217  T
Q  338 atgactttgtcacgcctcatgttatgtaacggcttactattttgcaggt 386  Q
     ||||| |||||||||||||||||  |||| | ||||||||||||||||    
T  110218 gtgactatgtcacgcctcatgttagataacagattactattttgcaggt 110266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 239 - 361
Target Start/End: Original strand, 127703 - 127820
Alignment:
Q  239 tgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggat-aaatccttaagcaca 337  Q
    |||||||||||||||||  |||||||||| |||||||||| ||||||||| |||     ||||||||||| || |||||||||| ||||||| ||| |||    
T  127703 tgttctgtcacctctgacatgattcatatcagggaagaac-tgttgtatcatgg-----gaggatatgcgtttctgaggcggataaaatcctcaaggaca 127796  T
Q  338 atgactttgtcacgcctcatgtta 361  Q
     ||||| |||||||||||| ||||    
T  127797 gtgactatgtcacgcctcaggtta 127820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 229 - 297
Target Start/End: Original strand, 27107296 - 27107364
Alignment:
Q  229 agattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggagga 297  Q
    |||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||    
T  27107296 agattcaagctgttctgtcacctctgatgtgatttacatcagggaagaacatgttgtatcctgggagga 27107364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 260 - 380
Target Start/End: Complemental strand, 27083183 - 27083068
Alignment:
Q  260 attcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgt 359  Q
    |||||||| |||||||||| ||||||||||||||||||     ||||||||| |||||||||||||||||| || |||  |||||||||| ||||||| |    
T  27083183 attcatattagggaagaacctgttgtatcctgggagga-----tatgcgcttgtgaggcggataaatccttcaggacagcgactttgtcatgcctcatct 27083089  T
Q  360 tatgtaacggcttactatttt 380  Q
    ||| |||| | ||| ||||||    
T  27083088 tatataacagtttattatttt 27083068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 10941485 - 10941409
Alignment:
Q  298 gaggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttact 375  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||||| ||| || |||||    
T  10941485 gaggatatgcgcttatgaggcgaataaatccttaaggacagtgac-ttgtcacgcctcatgttatataatggattact 10941409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 10947354 - 10947278
Alignment:
Q  298 gaggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttact 375  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||||| ||| || |||||    
T  10947354 gaggatatgcgcttatgaggcgaataaatccttaaggacagtgac-ttgtcacgcctcatgttatataatggattact 10947278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 387
Target Start/End: Original strand, 2590454 - 2590647
Alignment:
Q  192 attgagttcctgggttacatctcctgctatctttga--tagattcaagctgttctgtcacctctgatg-tgattcatatgagggaagaacatgttgtatc 288  Q
    |||||||| |||||||| |||||||| ||||| |||  || |||  || |||||||||||||| | |  |||||||||   ||||||||| |||||||||    
T  2590454 attgagtttctgggttatatctcctgatatctatgagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatc 2590552  T
Q  289 ctgggaggagaggatatgcgcttatgaggcggataaa-tccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcaggtc 387  Q
    |||||||||     ||||||||||||||||| ||||| |||| ||| ||| ||||| |||||||||||| |||||  ||||| |||| || |||||||||    
T  2590553 ctgggagga-----tatgcgcttatgaggcgaataaaatcctcaaggacagtgactatgtcacgcctcaggttattgaacggtttaccatgttgcaggtc 2590647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 298 - 386
Target Start/End: Original strand, 21189458 - 21189548
Alignment:
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatgttatgt-aacggcttactattttgcaggt 386  Q
    ||||||||||||||||||||||||| ||||||| ||| ||| ||||| |||||||||||| ||||  | ||| | ||||||||||||||||    
T  21189458 gaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttagataaacagtttactattttgcaggt 21189548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 356
Target Start/End: Complemental strand, 18739266 - 18739113
Alignment:
Q  201 ctgggttacatctcctgctatctttga--tagattcaagctgttctgtcacctctgatg-tgattcatatgagggaagaacatgttgtatcctgggagga 297  Q
    |||||||||||||| || ||| |||||  || |||| ||||||||||||||||| |||  |||||||||   |||||||||  |||||||  ||||||||    
T  18739266 ctgggttacatctcatgatatatttgagataaattcgagctgttctgtcacctccgattatgattcataacggggaagaacc-gttgtattgtgggagga 18739168  T
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctca 356  Q
         |||||||||||||||||||| ||||||| ||| ||| ||||| ||||||||||||    
T  18739167 -----tatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 18739113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 10938112 - 10938048
Alignment:
Q  310 ttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttact 375  Q
    |||||||||| ||||||||||||| ||| |||| ||||||||||||||||||| ||| || |||||    
T  10938112 ttatgaggcgaataaatccttaaggacagtgac-ttgtcacgcctcatgttatataatggattact 10938048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 454
Target Start/End: Complemental strand, 10937987 - 10937954
Alignment:
Q  421 gtcaaatcaccgcaatttcaagaaatataagttt 454  Q
    ||||||||||||||||||||||||| ||||||||    
T  10937987 gtcaaatcaccgcaatttcaagaaagataagttt 10937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 454
Target Start/End: Complemental strand, 10941348 - 10941315
Alignment:
Q  421 gtcaaatcaccgcaatttcaagaaatataagttt 454  Q
    ||||||||||||||||||||||||| ||||||||    
T  10941348 gtcaaatcaccgcaatttcaagaaagataagttt 10941315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 454
Target Start/End: Complemental strand, 10947217 - 10947184
Alignment:
Q  421 gtcaaatcaccgcaatttcaagaaatataagttt 454  Q
    ||||||||||||||||||||||||| ||||||||    
T  10947217 gtcaaatcaccgcaatttcaagaaagataagttt 10947184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 439
Target Start/End: Original strand, 38678742 - 38678887
Alignment:
Q  299 aggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatgttatgtaa---cggcttactattttgcaggtc--gattt 392  Q
    |||||||||||||||||| ||||| ||||||| ||  ||| ||||| |||||||||||| ||||| |||   ||||||||||| |||||||||  || ||    
T  38678742 aggatatgcgcttatgagacggatcaaatcctcaaagaca-tgactatgtcacgcctcaggttatataaatgcggcttactatattgcaggtcatgaatt 38678840  T
Q  393 cttgtttgattacttcaacgttaccgatgtcaaatcaccgcaatttc 439  Q
    |||||||| |||||||| |||||||||  ||||||||||| ||||||    
T  38678841 cttgtttgcttacttcaccgttaccgacttcaaatcaccgtaatttc 38678887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 201 - 386
Target Start/End: Complemental strand, 1789054 - 1788870
Alignment:
Q  201 ctgggttacatctcctgctatctttga--tagattcaagctgttctgtcacctctgatg-tgattcatatgagggaagaacatgttgtatcctgggagga 297  Q
    |||||||||||||| || |||||||||  || |||  || |||||||||||||| | |  |||||||||   ||||||||| ||||||||||||||||||    
T  1789054 ctgggttacatctcatgatatctttgagataaatttgagttgttctgtcacctccggttatgattcataacggggaagaac-tgttgtatcctgggagga 1788956  T
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatg-ttatgtaacggcttactattttgcaggt 386  Q
         |||||||||||||||||||| ||||||| ||| ||| ||||| |||||||||||| | |||||||| || ||||| ||| ||||||    
T  1788955 -----tatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggtttatgtaatggtttactttttggcaggt 1788870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 298 - 387
Target Start/End: Complemental strand, 21185382 - 21185292
Alignment:
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcaggtc 387  Q
    ||||||||||||||||||||||||| ||||||| ||| ||| ||||| |||||||| ||| |||||  ||||| |||| || |||||||||    
T  21185382 gaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcttcaggttattgaacggtttaccatgttgcaggtc 21185292  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 419
Target Start/End: Original strand, 38676896 - 38676997
Alignment:
Q  323 aaatccttaagcacaatgactttgtcacgcctcatgttatgtaa---cggcttactattttgcaggtc--gatttcttgtttgattacttcaacgttacc 417  Q
    ||||||| ||| ||| ||||| |||||||||||| ||||| |||   ||||||||||| |||||||||  || |||||||||| |||||||| |||||||    
T  38676896 aaatcctcaaggacagtgactatgtcacgcctcaggttatataaatgcggcttactatgttgcaggtcatgaattcttgtttgcttacttcaccgttacc 38676995  T
Q  418 ga 419  Q
    ||    
T  38676996 ga 38676997  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 454
Target Start/End: Complemental strand, 609899 - 609837
Alignment:
Q  392 tcttgtttgattacttcaacgttaccgatgtcaaatcaccgcaatttcaagaaatataagttt 454  Q
    ||||||||| |||||||| | ||||| | |||||||||||||||||||||| || ||||||||    
T  609899 tcttgtttgtttacttcaccattaccaacgtcaaatcaccgcaatttcaaggaagataagttt 609837  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 444
Target Start/End: Original strand, 22264492 - 22264545
Alignment:
Q  391 ttcttgtttgattacttcaacgttaccgatgtcaaatcaccgcaatttcaagaa 444  Q
    |||||||||| |||||||| ||||||| |  |||||||||||||||||||||||    
T  22264492 ttcttgtttgtttacttcaccgttaccaacttcaaatcaccgcaatttcaagaa 22264545  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 17028411 - 17028475
Alignment:
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatgtta 361  Q
    ||||||||||||| ||||||||||| ||||||| ||| ||| ||||| |||||||||||| ||||    
T  17028411 gaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtta 17028475  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 17558847 - 17558911
Alignment:
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatgtta 361  Q
    ||||||||||||| ||||||||||| ||||||| ||| ||| ||||| |||||||||||| ||||    
T  17558847 gaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtta 17558911  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 39655760 - 39655696
Alignment:
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatgtta 361  Q
    |||||||||| |||||||||||||| ||||||| ||| ||| ||||| |||||||||||| ||||    
T  39655760 gaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggtta 39655696  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 33940500 - 33940438
Alignment:
Q  300 ggatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgttat 362  Q
    |||| ||| |||||||| |||||||||||||||| ||| |||||| |||| |||||| |||||    
T  33940500 ggatttgcacttatgagacggataaatccttaaggacagtgacttcgtcaagcctcaggttat 33940438  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 356
Target Start/End: Original strand, 13291956 - 13292068
Alignment:
Q  239 tgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatccttaagcacaa 338  Q
    |||||| ||||||||||| |||||||||| || ||| ||| |||||||||||||     |||||||||||||||||||||||||||||| ||||| |||     
T  13291956 tgttctatcacctctgatatgattcatatcagagaataacctgttgtatcctgg-----gaggatatgcgcttatgaggcggataaatctttaaggacag 13292050  T
Q  339 tgactttgtcacgcctca 356  Q
    | |||| |||| ||||||    
T  13292051 taacttcgtcatgcctca 13292068  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 386
Target Start/End: Original strand, 39292156 - 39292244
Alignment:
Q  299 aggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctcatgttatgtaacggcttactattttgcaggt 386  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||| | |||| ||||| ||||  ||| || ||| | ||||||||||    
T  39292156 aggatatgcgcttatgaggcggataaaatccttaaggacagtgactatatcacacctcaggttagataatggtttattgttttgcaggt 39292244  T

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Target: scaffold0933 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 333
Target Start/End: Complemental strand, 1169 - 1071
Alignment:
Q  229 agattcaagctgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcctgggaggagaggatatgcgcttatgaggcggataaatcc 328  Q
    ||||||||| || |||||| | ||||||||||||||||| ||||||||||||||||||| |||      |||||||||| ||||||||||  |||||||     
T  1169 agattcaagttgctctgtcgcatctgatgtgattcatattagggaagaacatgttgtatgctg------gaggatatgcacttatgaggctaataaatct 1076  T

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Target: scaffold0933; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 360
Target Start/End: Original strand, 804 - 863
Alignment:
Q  301 gatatgcgcttatgaggcggataaatccttaagcacaatgactttgtcacgcctcatgtt 360  Q
    ||||||| ||||||||||||| |||| | |||| ||| ||||||||||||||||||||||    
T  804 gatatgctcttatgaggcggaaaaatacctaaggacagtgactttgtcacgcctcatgtt 863  T

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Target: scaffold0216 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 12116 - 12167
Alignment:
Q  239 tgttctgtcacctctgatgtgattcatatgagggaagaacatgttgtatcct 290  Q
    |||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  12116 tgttctgtcacctctgatatgattcatataagggaagaacttgttgtatcct 12167  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 356
Target Start/End: Original strand, 82678 - 82737
Alignment:
Q  298 gaggatatgcgcttatgaggcggat-aaatccttaagcacaatgactttgtcacgcctca 356  Q
    ||||||||||||||||||||||||| ||||||| ||| | | ||||| ||||||||||||    
T  82678 gaggatatgcgcttatgaggcggataaaatcctcaaggatagtgactatgtcacgcctca 82737  T

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