View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1942_low_6 (Length: 472)
Name: NF1942_low_6
Description: NF1942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1942_low_6 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 164 - 472
Target Start/End: Complemental strand, 34873466 - 34873153
Alignment:
| Q |
164 |
ctgtaggacatggtaaatag--cacacacatagttaaaaaatttagtaaaagaactcgtgatgcatatgtagacaccctcct---taacatacatatctt |
258 |
Q |
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|||||||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
34873466 |
ctgtaggacatggtaaatagtgcacacacataattaaaaattttaataaaagaactcgtgatgcatatgtagacaccctcctaattaacatacatagctt |
34873367 |
T |
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| Q |
259 |
caagatttacagtaagaatatgttctgtgtcgataatacttggtatttagaaaatcctaattttatttttcaatgttaaatggccttatcgagttaaaat |
358 |
Q |
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| T |
34873366 |
caagatttacaataagaatatgttctgtgtcgataatacttggtatttagaaaatcctaattttatttttcaatgttaaatggccttatcgagttaaaat |
34873267 |
T |
|
| Q |
359 |
atgaaatagatacatgacttacatgtttactcagtgcattggaacagttttcatgtcagtgtctgtccttgctttctagaatatagcatgtgttatgtta |
458 |
Q |
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| T |
34873266 |
atgaaatagatacatgacttacatgtttactcagtgcattggaacatttttcatgtcagtgtgtgtccttgctttctagaatatagcatgtgttatgtta |
34873167 |
T |
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| Q |
459 |
tgtgccataaaaca |
472 |
Q |
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| T |
34873166 |
tgtgccataaaaca |
34873153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 23 - 138
Target Start/End: Complemental strand, 34873604 - 34873489
Alignment:
| Q |
23 |
tgctccatcttgtgttttgtcgttatgattctgatatttgattcttgttagaatatatatttactataacctgtgaagcattgatgtcgactttgacatg |
122 |
Q |
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| T |
34873604 |
tgctccatcttgtgttttatcgttatgattatgatatttgattcttgttagaatatatatttactataacctgtgaagcattgatgttgactttgacatg |
34873505 |
T |
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| Q |
123 |
tgataaaatatgcacg |
138 |
Q |
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| T |
34873504 |
tgataaaataggcacg |
34873489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 311 - 455
Target Start/End: Original strand, 9919035 - 9919180
Alignment:
| Q |
311 |
aatcctaattttatttttcaatgttaaatggccttatcgagttaaaa-tatgaaatagatacatgacttacatgtttactcagtgcattggaacagtttt |
409 |
Q |
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| T |
9919035 |
aatcctaattttatttttcaatgttaaatggccatgtcgagttaaaaatatgaaacagatgcaagattaacatgtttccttagtgcattggaacaatttt |
9919134 |
T |
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| Q |
410 |
catgtcagtgtctgtccttgctttctagaatatagcatgtgttatg |
455 |
Q |
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| T |
9919135 |
catgtcagtgtgtgtccttgctttctagaatatagtatgtgttatg |
9919180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 23 - 138
Target Start/End: Original strand, 34872020 - 34872135
Alignment:
| Q |
23 |
tgctccatcttgtgttttgtcgttatgattctgatatttgattcttgttagaatatatatttactataacctgtgaagcattgatgtcgactttgacatg |
122 |
Q |
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| T |
34872020 |
tgctccatcttgtgttttatcgttatgattatgatatttgattcttgtttaaatatatatttactataacatgtgaagcattgatgttgactttgacatg |
34872119 |
T |
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| Q |
123 |
tgataaaatatgcacg |
138 |
Q |
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| T |
34872120 |
tgataaaataggcacg |
34872135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 9918740 - 9918854
Alignment:
| Q |
23 |
tgctccatcttgtgttttgtcgttatgattctgatatttgattcttgttagaatatatatttactataacctgtgaagcattgatgtcgactttgacatg |
122 |
Q |
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| T |
9918740 |
tgctccatcttgtgttttatcgttatgattatgctatttgattcttgtttgaatatatatttactataacttatgaaacaatggtgttggctttgacatg |
9918839 |
T |
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| Q |
123 |
tgataaaatatgcac |
137 |
Q |
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||| |||||| |||| |
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| T |
9918840 |
tgacaaaataggcac |
9918854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 316 - 386
Target Start/End: Complemental strand, 34874950 - 34874885
Alignment:
| Q |
316 |
taattttatttttcaatgttaaatggccttatcgagttaaaatatgaaatagatacatgacttacatgttt |
386 |
Q |
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| T |
34874950 |
taattttatttttcaatgttaaatgacc-----gagttaaaatatgaaacagatacatgactaacatgttt |
34874885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 34872162 - 34872233
Alignment:
| Q |
168 |
aggacatggtaaatagcacacaca--tagttaaaaaatttagtaaaagaactcgtgatgcatatgtagacac |
237 |
Q |
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| T |
34872162 |
aggacacggtaaatagcacacacacataattgaaaattttaggaaaagaactcatgatgcatatgtagacac |
34872233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 311
Target Start/End: Original strand, 9918905 - 9919019
Alignment:
| Q |
198 |
aaaaatttagtaaaagaactcgtgatgcatatgtagacaccctccttaacat--acatatcttcaagatttacagtaaga-atatgttctgtgtcgataa |
294 |
Q |
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| T |
9918905 |
aaaaatttaggaaaagaactgattat--atatgaagacaccctccttaacactcacatagcttcaagatttacaatatgatacatgttctgtgtcaataa |
9919002 |
T |
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| Q |
295 |
tacttggtatttagaaa |
311 |
Q |
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|||| |||||| ||||| |
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| T |
9919003 |
tactcggtattcagaaa |
9919019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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