View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19430_high_12 (Length: 295)
Name: NF19430_high_12
Description: NF19430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19430_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 32687242 - 32687520
Alignment:
| Q |
1 |
tgttgaatttatttaacggattaaacaatgattcaaagatctcatcgattctatct--ggtctaattttttaaatattcgagaaaccgaaacctgtannn |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
32687242 |
tgttgaatttatttaacggattaaacaatgattcaaagatctcatcgattctatctttggtctaattttttaaatatttgagaaaccgaaacctgtattt |
32687341 |
T |
|
| Q |
99 |
nnnnaaattgaaccaattaaaaatagcatgtttggtttttatgatgnnnnnnncatgaagttttaaccaaattggatcgatgaagaaccaattattttga |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
32687342 |
tttaaaattgaaccaattaaaaatagcatgtttggtttttatgatgtttttttcataaaattttaaccaaattggatcgatgaagaaccaattattttga |
32687441 |
T |
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| Q |
199 |
ttcagttcaatcagattgatccattttaaaaatactacataacttannnnnnngaaaatctaaaaacattaactttatttc |
279 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
32687442 |
ttcagttcaatcagattga--cattttaaaaatactacatagctttttttcttgaaaatctaaaaacattaactttatttc |
32687520 |
T |
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